The Rice Annotation Project Database (RAP-DB): 2008 update.
The Rice Annotation Project Database (RAP-DB): 2008 update.
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DOI：
10.1093/nar/gkm978
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发表时间：
2008-01
影响因子：
14.9
通讯作者：
Echeverria M
中科院分区：
文献类型：
--
作者：
Rice Annotation Project;Tanaka T;Antonio BA;Kikuchi S;Matsumoto T;Nagamura Y;Numa H;Sakai H;Wu J;Itoh T;Sasaki T;Aono R;Fujii Y;Habara T;Harada E;Kanno M;Kawahara Y;Kawashima H;Kubooka H;Matsuya A;Nakaoka H;Saichi N;Sanbonmatsu R;Sato Y;Shinso Y;Suzuki M;Takeda J;Tanino M;Todokoro F;Yamaguchi K;Yamamoto N;Yamasaki C;Imanishi T;Okido T;Tada M;Ikeo K;Tateno Y;Gojobori T;Lin YC;Wei FJ;Hsing YI;Zhao Q;Han B;Kramer MR;McCombie RW;Lonsdale D;O'Donovan CC;Whitfield EJ;Apweiler R;Koyanagi KO;Khurana JP;Raghuvanshi S;Singh NK;Tyagi AK;Haberer G;Fujisawa M;Hosokawa S;Ito Y;Ikawa H;Shibata M;Yamamoto M;Bruskiewich RM;Hoen DR;Bureau TE;Namiki N;Ohyanagi H;Sakai Y;Nobushima S;Sakata K;Barrero RA;Sato Y;Souvorov A;Smith-White B;Tatusova T;An S;An G;OOta S;Fuks G;Fuks G;Messing J;Christie KR;Lieberherr D;Kim H;Zuccolo A;Wing RA;Nobuta K;Green PJ;Lu C;Meyers BC;Chaparro C;Piegu B;Panaud O;Echeverria M
水稻注释项目数据库（RAP-DB）的创建是为了提供国际水稻基因组测序计划（IRGSP）的基因组序列组装，人工管理的序列注释，以及其他有助于全面了解水稻生物学的基因组学信息。自RAP-DB的最后一次出版以来，IRGSP基因组已被修订和重新组装。此外，还发布了大量水稻表达序列标签，并在全球范围内产生了功能基因组学资源。因此，我们通过手动整理水稻基因的所有功能描述，彻底更新了我们的基因组注释。RAP-DB的最新版本包含了以下各种注释数据：克隆位置，结构和功能的31 439个基因的cDNA验证，RNA基因检测的大规模并行签名测序（MPSS）技术和序列相似性，侧翼序列的突变株，转座因子等。其他注释数据，如Gnomon可以显示沿着与RAP的那些进行比较。我们还开发了一个新的关键字搜索系统，让用户访问有用的信息。RAP-DB可在http://rapdb.dna.affrc.go.jp/和http://rapdb.lab.nig.ac.jp/上获得。
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/.
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影响因子：
3.7
作者：
Li L;Wang X;Sasidharan R;Stolc V;Deng W;He H;Korbel J;Chen X;Tongprasit W;Ronald P;Chen R;Gerstein M;Deng XW
通讯作者：
Deng XW
影响因子：
5.1
作者：
van Enckevort, LJG;Droc, G;Pereira, A
通讯作者：
Pereira, A
影响因子：
64.8
作者：
Matsumoto, T;Wu, JZ;Sugiura, M
通讯作者：
Sugiura, M
影响因子：
46.9
作者：
Meyers, BC;Vu, TH;Haudenschild, CD
通讯作者：
Haudenschild, CD
影响因子：
14.9
作者：
Ouyang S;Zhu W;Hamilton J;Lin H;Campbell M;Childs K;Thibaud-Nissen F;Malek RL;Lee Y;Zheng L;Orvis J;Haas B;Wortman J;Buell CR
通讯作者：
Buell CR