Gramene: a growing plant comparative genomics resource.
Gramene: a growing plant comparative genomics resource.
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Gramene：一种不断增长的植物比较基因组学资源。
DOI：
10.1093/nar/gkm968
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发表时间：
2008-01
影响因子：
14.9
通讯作者：
Stein, Lincoln
中科院分区：
文献类型：
--
作者：
Liang, Chengzhi;Jaiswal, Pankaj;Hebbard, Claire;Avraham, Shuly;Buckler, Edward S.;Casstevens, Terry;Hurwitz, Bonnie;McCouch, Susan;Ni, Junjian;Pujar, Anuradha;Ravenscroft, Dean;Ren, Liya;Spooner, William;Tecle, Isaak;Thomason, Jim;Tung, Chih-wei;Wei, Xuehong;Yap, Immanuel;Youens-Clark, Ken;Ware, Doreen;Stein, Lincoln
Gramene（www.gramene.org）是一个主要作物物种遗传、基因组和比较基因组学数据的精选资源，包括水稻、玉米、小麦和许多其他植物（主要是草）物种。Gramene是一个开源项目。所有数据和软件均可通过ftp网站（ftp.gramene.org/pub/gramene）免费下载，并可不受限制地使用。Gramene的核心数据类型包括基因组组装和注释、其他DNA/mRNA序列、遗传和物理图谱/标记、基因、数量性状基因座（QTL）、蛋白质、本体、文献和比较作图。自2年前的NAR出版物以来，我们更新了这些数据类型，以包括新的数据集和它们之间的新连接。全新的功能包括：水稻基因功能注释的水稻途径;水稻、玉米和小麦的遗传多样性数据，以显示不同种系之间的遗传变异;水稻及其野生近缘种之间的大规模基因组比较，以进行进化研究;以及创建水稻、拟南芥、玉米、白杨和几种动物物种之间的直向同源基因组和系统发育树（供参考）。我们对网页界面进行了重大改进，以提供更方便用户的浏览体验，包括一个可浏览的导航菜单系统，标记、基因、QTL和蛋白质的统一网页，以及增强的快速搜索功能。
Gramene (www.gramene.org) is a curated resource for genetic, genomic and comparative genomics data for the major crop species, including rice, maize, wheat and many other plant (mainly grass) species. Gramene is an open-source project. All data and software are freely downloadable through the ftp site (ftp.gramene.org/pub/gramene) and available for use without restriction. Gramene's core data types include genome assembly and annotations, other DNA/mRNA sequences, genetic and physical maps/markers, genes, quantitative trait loci (QTLs), proteins, ontologies, literature and comparative mappings. Since our last NAR publication 2 years ago, we have updated these data types to include new datasets and new connections among them. Completely new features include rice pathways for functional annotation of rice genes; genetic diversity data from rice, maize and wheat to show genetic variations among different germplasms; large-scale genome comparisons among Oryza sativa and its wild relatives for evolutionary studies; and the creation of orthologous gene sets and phylogenetic trees among rice, Arabidopsis thaliana, maize, poplar and several animal species (for reference purpose). We have significantly improved the web interface in order to provide a more user-friendly browsing experience, including a dropdown navigation menu system, unified web page for markers, genes, QTLs and proteins, and enhanced quick search functions.
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影响因子：
14.9
作者：
Mulder NJ;Apweiler R;Attwood TK;Bairoch A;Bateman A;Binns D;Bork P;Buillard V;Cerutti L;Copley R;Courcelle E;Das U;Daugherty L;Dibley M;Finn R;Fleischmann W;Gough J;Haft D;Hulo N;Hunter S;Kahn D;Kanapin A;Kejariwal A;Labarga A;Langendijk-Genevaux PS;Lonsdale D;Lopez R;Letunic I;Madera M;Maslen J;McAnulla C;McDowall J;Mistry J;Mitchell A;Nikolskaya AN;Orchard S;Orengo C;Petryszak R;Selengut JD;Sigrist CJ;Thomas PD;Valentin F;Wilson D;Wu CH;Yeats C
通讯作者：
Yeats C
影响因子：
14.9
作者：
Lawrence, CJ;Dong, OF;Brendel, V
通讯作者：
Brendel, V
影响因子：
14.9
作者：
Ouyang S;Zhu W;Hamilton J;Lin H;Campbell M;Childs K;Thibaud-Nissen F;Malek RL;Lee Y;Zheng L;Orvis J;Haas B;Wortman J;Buell CR
通讯作者：
Buell CR
影响因子：
7.4
作者：
Mueller, LA;Zhang, PF;Rhee, SY
通讯作者：
Rhee, SY
影响因子：
14.9
作者：
Griffiths-Jones S;Grocock RJ;van Dongen S;Bateman A;Enright AJ
通讯作者：
Enright AJ