PlantNLRatlas: a comprehensive dataset of full- and partial-length NLR resistance genes across 100 chromosome-level plant genomes.
PlantNLRatlas: a comprehensive dataset of full- and partial-length NLR resistance genes across 100 chromosome-level plant genomes.
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PlantNLRatlas：横跨100个染色体水平的植物基因组的全长度和部分长度NLR抗性基因的综合数据集。
DOI：
10.3389/fpls.2023.1178069
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发表时间：
2023
影响因子：
5.6
通讯作者：
中科院分区：
文献类型：
--
作者：
植物已经进化出两层保护来对抗生物胁迫：PAMP触发的免疫（PTI）和效应物触发的免疫（ETI）。ETI的主要机制涉及核苷酸结合富含亮氨酸的重复免疫受体（NLR）。虽然NLR基因已经在几种植物物种中进行了研究，但仍然缺乏一个跨多种物种的全面的NLR数据库。在这里，我们提出了一个全面的分析NLR基因在100个高质量的植物基因组（PlantNLR图谱）。PlantNLR图谱共包括68，452个NLR，其中3，689个是全长NLR，64，763个是部分长度NLR。大多数NLR组是系统聚类的。此外，发现结构域序列在每个NLR组内高度保守。我们的PlantNLRatlas数据集与RefPlantNLR是互补的，RefPlantNLR是一个已被实验证实的NLR基因集合。PlantNLR图谱应证明有助于跨一系列植物组，包括未充分研究的类群的NLR的比较调查。最后，PlantNLRatlas资源旨在帮助该领域超越对NLR结构和功能的整体理解。
Plants have evolved two layers of protection against biotic stress: PAMP-triggered immunity (PTI) and effector-triggered immunity (ETI). The primary mechanism of ETI involves nucleotide-binding leucine-rich repeat immune receptors (NLRs). Although NLR genes have been studied in several plant species, a comprehensive database of NLRs across a diverse array of species is still lacking. Here, we present a thorough analysis of NLR genes across 100 high-quality plant genomes (PlantNLRatlas). The PlantNLRatlas includes a total of 68,452 NLRs, of which 3,689 are full-length and 64,763 are partial-length NLRs. The majority of NLR groups were phyletically clustered. In addition, the domain sequences were found to be highly conserved within each NLR group. Our PlantNLRatlas dataset is complementary to RefPlantNLR, a collection of NLR genes which have been experimentally confirmed. The PlantNLRatlas should prove helpful for comparative investigations of NLRs across a range of plant groups, including understudied taxa. Finally, the PlantNLRatlas resource is intended to help the field move past a monolithic understanding of NLR structure and function.
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影响因子：
5.6
作者：
Christie N;Tobias PA;Naidoo S;Külheim C
通讯作者：
Külheim C
影响因子：
3.1
作者：
Inturrisi, Fabian;Bayer, Philipp E.;Batley, Jacqueline
通讯作者：
Batley, Jacqueline
影响因子：
4.4
作者：
Huang Z;Qiao F;Yang B;Liu J;Liu Y;Wulff BBH;Hu P;Lv Z;Zhang R;Chen P;Xing L;Cao A
通讯作者：
Cao A
影响因子：
30.8
作者：
Raymond O;Gouzy J;Just J;Badouin H;Verdenaud M;Lemainque A;Vergne P;Moja S;Choisne N;Pont C;Carrère S;Caissard JC;Couloux A;Cottret L;Aury JM;Szécsi J;Latrasse D;Madoui MA;François L;Fu X;Yang SH;Dubois A;Piola F;Larrieu A;Perez M;Labadie K;Perrier L;Govetto B;Labrousse Y;Villand P;Bardoux C;Boltz V;Lopez-Roques C;Heitzler P;Vernoux T;Vandenbussche M;Quesneville H;Boualem A;Bendahmane A;Liu C;Le Bris M;Salse J;Baudino S;Benhamed M;Wincker P;Bendahmane M
通讯作者：
Bendahmane M
影响因子：
2.7
作者：
Ding, Li;Xu, Xiameng;Zou, Lifang
通讯作者：
Zou, Lifang