Correlation analysis of the mRNA and miRNA expression profiles in the nascent synthetic allotetraploid Raphanobrassica.
Correlation analysis of the mRNA and miRNA expression profiles in the nascent synthetic allotetraploid Raphanobrassica.
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新生合成异源四倍体萝卜中 mRNA 和 miRNA 表达谱的相关分析
DOI：
10.1038/srep37416
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发表时间：
2016-11-22
影响因子：
4.6
通讯作者：
Wang J
中科院分区：
文献类型：
--
作者：
Ye B;Wang R;Wang J
Raphanobrassicais an allopolyploid species derived from inter-generic hybridization that combines the R genome fromR. sativusand the C genome fromB. oleraceavar.alboglabra. In the present study, we used a high-throughput sequencing method to identify the mRNA and miRNA profiles inRaphanobrassicaand its parents. A total of 33,561 mRNAs and 283 miRNAs were detected, 9,209 mRNAs and 134 miRNAs were differentially expressed respectively, 7,633 mRNAs and 39 miRNAs showed ELD expression, 5,219 mRNAs and 57 miRNAs were non-additively expressed inRaphanobrassica. Remarkably, differentially expressed genes (DEGs) were up-regulated and maternal bias was detected inRaphanobrassica. In addition, a miRNA-mRNA interaction network was constructed based on reverse regulated miRNA-mRNAs, which included 75 miRNAs and 178 mRNAs, 31 miRNAs were non-additively expressed target by 13 miRNAs. The related target genes were significantly enriched in the GO term ‘metabolic processes’. Non-additive related target genes regulation is involved in a range of biological pathways, like providing a driving force for variation and adaption in this allopolyploid. The integrative analysis of mRNA and miRNA profiling provides more information to elucidate gene expression mechanism and may supply a comprehensive and corresponding method to study genetic and transcription variation of allopolyploid.
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影响因子：
1.4
作者：
Danilova, M. N.;Kudryakova, N. V.;Kuznetsov, V. V.
通讯作者：
Kuznetsov, V. V.
DOI：
10.1073/pnas.0704901104
发表时间：
2007-12-11
影响因子：
11.1
作者：
Chen, Zhongying;Agnew, Jennifer L.;Kunkel, Barbara N.
通讯作者：
Kunkel, Barbara N.
影响因子：
9.4
作者：
Chague, Veronique;Just, Jeremy;Chalhoub, Boulos
通讯作者：
Chalhoub, Boulos
miRNA 和 siRNA 在植物生物和非生物胁迫反应中的作用。
DOI：
10.1016/j.bbagrm.2011.05.001
发表时间：
2012-02
影响因子：
4.7
作者：
Khraiwesh, Basel;Zhu, Jian-Kang;Zhu, Jianhua
通讯作者：
Zhu, Jianhua
影响因子：
9.4
作者：
Chelaifa, Houda;Chague, Veronique;Chalhoub, Boulos
通讯作者：
Chalhoub, Boulos