Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera.
Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera.
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DOI：
10.1186/s12983-018-0262-0
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发表时间：
2018
影响因子：
2.8
通讯作者：
Bocak L
中科院分区：
文献类型：
--
作者：
Kusy D;Motyka M;Andujar C;Bocek M;Masek M;Sklenarova K;Kokas F;Bocakova M;Vogler AP;Bocak L
Lawrence鼻甲科（Rhinorhipidae Lawrence, 1988）是一个神秘的甲虫科，由来自澳大利亚的一个单一物种——Rhinorhipus tamborinensis Lawrence（1988）代表，与超科Elateriformia（点击甲虫、士兵甲虫和萤火虫）或更广泛的系列（次目）Elateriformia的亲缘关系不太确定。它的进化位置可能为鞘翅目最大分支多食亚目的基本关系提供信息。我们分析了四个密集采样的鞘翅目主要谱系的有丝分裂基因组、rRNA基因和单拷贝核基因的DNA数据集。此外，利用基因组测序将坦伯林河鼠纳入到代表12个多面体超家族的24个末端的4220个直系同源物中。拓扑结构不同程度地不同，但都一致地反驳了将Rhinorhipidae置于Elateriformia总科中的建议，相反，它们要么与其他Elateriformia有姐妹关系，经常与Nosodendridae（迄今为止被置于derodonto总科中的另一个不同的小科）在一起，要么在polyhaga最深的谱系中处于孤立的位置。系统基因组学分析恢复了鼻虫与所有其他由五个超科组成的鹰嘴虫属的姐妹地位。因此，我们建立了新的超科Rhinorhipoidea （Lawrence, 1988, stat. Nov.）和类型科rhinorhiidae。鼻河马科的起源可以追溯到上三叠世/下侏罗纪，在多面体多样化的早期阶段。因此，鼻虫科为最近发现的几个古老的遗存谱系增添了另一个例子，这些谱系散布在同时期物种丰富的鞘翅目谱系中。本文的在线版本（10.1186/s12983-018-0262-0）包含补充资料，仅供授权用户使用。
Rhinorhipidae Lawrence, 1988 is an enigmatic beetle family represented by a single species, Rhinorhipus tamborinensis Lawrence, 1988, from Australia, with poorly established affinities near the superfamily Elateroidea (click beetles, soldier beetles and fireflies) or the more inclusive series (infraorder) Elateriformia. Its evolutionary position may inform the basal relationships of the suborder Polyphaga, the largest clade of Coleoptera. We analyzed four densely sampled DNA datasets of major coleopteran lineages for mitogenomes, rRNA genes and single copy nuclear genes. Additionally, genome sequencing was used for incorporation of R. tamborinensis into a set of 4220 orthologs for 24 terminals representing 12 polyphagan superfamilies. Topologies differed to various degrees, but all consistently refute the proposed placement of Rhinorhipidae in Elateroidea and instead indicate either sister relationships with other Elateriformia, frequently together with Nosodendridae, another divergent small family hitherto placed in Derodontoidea, or in an isolated position among the deepest lineages of Polyphaga. The phylogenomic analyses recovered Rhinorhipus in a sister position to all other Elateriformia composed of five superfamilies. Therefore, we erect the new superfamily Rhinorhipoidea Lawrence, 1988, stat. Nov., with the type-family Rhinorhipidae. The origins of the Rhinorhipidae were dated to the Upper Triassic/Lower Jurassic at the very early phase of polyphagan diversification. Thus, Rhinorhipidae adds another example to several recently recognized ancient relict lineages which are interspersed within contemporaneous hugely species-rich lineages of Coleoptera. The online version of this article (10.1186/s12983-018-0262-0) contains supplementary material, which is available to authorized users.
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DOI：
10.1073/pnas.89.22.10915
发表时间：
1992-11-15
影响因子：
11.1
作者：
HENIKOFF, S;HENIKOFF, JG
通讯作者：
HENIKOFF, JG
影响因子：
1.3
作者：
Bouchard P;Bousquet Y;Davies AE;Alonso-Zarazaga MA;Lawrence JF;Lyal CH;Newton AF;Reid CA;Schmitt M;Slipiński SA;Smith AB
通讯作者：
Smith AB
影响因子：
1.3
作者：
Amaral, Danilo T.;Silva, Jaqueline R.;Viviani, Vadim R.
通讯作者：
Viviani, Vadim R.
影响因子：
10.7
作者：
Hoang DT;Chernomor O;von Haeseler A;Minh BQ;Vinh LS
通讯作者：
Vinh LS
影响因子：
1.7
作者：
Bankevich, Anton;Nurk, Sergey;Pevzner, Pavel A.
通讯作者：
Pevzner, Pavel A.