EcoliWiki: a wiki-based community resource for Escherichia coli.

EcoliWiki: a wiki-based community resource for Escherichia coli.
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DOI:
10.1093/nar/gkr880
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发表时间:
2012-01
影响因子:
14.9
通讯作者:
Hu JC
Hu JC
中科院分区:
生物学2区
文献类型:
--
作者:
McIntosh BK;Renfro DP;Knapp GS;Lairikyengbam CR;Liles NM;Niu L;Supak AM;Venkatraman A;Zweifel AE;Siegele DA;Hu JC

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EcoliWiki是PortEco (http://porteco.org;前身为EcoliHub)项目的社区注释组件,该项目是一个在线数据资源,整合了大肠杆菌实验室菌株、噬菌体、质粒和移动遗传元件的信息。作为早期采用wiki方法建立模型生物数据库的公司之一,EcoliWiki的目的不仅是促进社区驱动的关于大肠杆菌模型生物的生物知识共享,而且还可以与其他数据资源进行互操作。EcoliWiki的内容目前涵盖了5个实验室大肠杆菌菌株、21个噬菌体基因组、F质粒和8个转座子的基因。EcoliWiki将Mediawiki平台与其他开源软件工具和内部软件开发集成在一起,以扩展wiki如何用于模型生物数据库。EcoliWiki可以通过http://ecoliwiki.net在线访问。
EcoliWiki is the community annotation component of the PortEco (http://porteco.org; formerly EcoliHub) project, an online data resource that integrates information on laboratory strains of Escherichia coli, its phages, plasmids and mobile genetic elements. As one of the early adopters of the wiki approach to model organism databases, EcoliWiki was designed to not only facilitate community-driven sharing of biological knowledge about E. coli as a model organism, but also to be interoperable with other data resources. EcoliWiki content currently covers genes from five laboratory E. coli strains, 21 bacteriophage genomes, F plasmid and eight transposons. EcoliWiki integrates the Mediawiki wiki platform with other open-source software tools and in-house software development to extend how wikis can be used for model organism databases. EcoliWiki can be accessed online at http://ecoliwiki.net.
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