GenBank.

GenBank.
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DOI:
10.1093/nar/gks1195
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发表时间:
2013-01
影响因子:
14.9
通讯作者:
Sayers EW
Sayers EW
中科院分区:
生物学2区
文献类型:
--
作者:
Benson DA;Cavanaugh M;Clark K;Karsch-Mizrachi I;Lipman DJ;Ostell J;Sayers EW

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GenBank®(http:www.ncbi.nlm.nih.gov)是一个全面的数据库,包含近260 000种正式描述的物种的公开可用的核苷酸序列。这些序列主要是通过单个实验室提交的资料和大规模测序项目(包括全基因组鸟枪测序项目和环境采样项目)的批量提交资料获得的。大多数提交是使用基于网络的BankIt或独立的Sequin程序进行的,基因库工作人员在收到数据后分配登录号。与欧洲核苷酸档案馆(ENA)和日本DNA数据库(DDBJ)的每日数据交换确保了全球范围的覆盖。基因库可通过NCBI检索系统访问,该系统将来自主要DNA和蛋白质序列数据库的数据与分类学、基因组、作图、蛋白质结构和结构域信息以及通过PubMed的生物医学期刊文献沿着。BLAST提供GenBank和其他序列数据库的序列相似性检索。基因库数据库的完整双月发布和每日更新可通过FTP获得。要访问GenBank及其相关检索和分析服务,请开始访问NCBI主页:www.ncbi.nlm.nih.gov。
GenBank® (http://www.ncbi.nlm.nih.gov) is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.
DOI: 10.1038/nmeth.1459
发表时间: 2010-06
期刊: NATURE METHODS
影响因子: 48
作者:
Flusberg, Benjamin A.;Webster, Dale R.;Lee, Jessica H.;Travers, Kevin J.;Olivares, Eric C.;Clark, Tyson A.;Korlach, Jonas;Turner, Stephen W.
通讯作者: Turner, Stephen W.
DOI: 10.1093/nar/gkv1323
发表时间: 2016-01-04
影响因子: 14.9
作者:
Cochrane G;Karsch-Mizrachi I;Takagi T;International Nucleotide Sequence Database Collaboration
通讯作者: International Nucleotide Sequence Database Collaboration
DOI: 10.1093/nar/gkv1276
发表时间: 2016-01-04
影响因子: 14.9
作者:
Clark K;Karsch-Mizrachi I;Lipman DJ;Ostell J;Sayers EW
通讯作者: Sayers EW
DOI: 10.1093/nar/gkr854
发表时间: 2012-01
影响因子: 14.9
作者:
Kodama Y;Shumway M;Leinonen R;International Nucleotide Sequence Database Collaboration
通讯作者: International Nucleotide Sequence Database Collaboration
DOI: 10.1093/nar/gkr1178
发表时间: 2012-01
影响因子: 14.9
作者:
Federhen S
通讯作者: Federhen S