The mwtab Python Library for RESTful Access and Enhanced Quality Control, Deposition, and Curation of the Metabolomics Workbench Data Repository.
The mwtab Python Library for RESTful Access and Enhanced Quality Control, Deposition, and Curation of the Metabolomics Workbench Data Repository.
复制标题
mwtab Python 库，用于 RESTful 访问和增强代谢组学工作台数据存储库的质量控制、沉积和管理。
DOI：
10.3390/metabo11030163
复制
发表时间：
2021-03-12
期刊：
影响因子：
4.1
通讯作者：
Moseley HNB
中科院分区：
文献类型：
--
作者：
Powell CD;Moseley HNB
代谢组学数据库（MW）是一个公共科学数据库，由通过质谱（MS）和核磁共振（NMR）分析收集的代谢组学研究的实验数据和元数据组成。MW一直在不断发展;更新其“mwTab”文本文件格式，添加JavaScript Object Notation（JSON）文件格式，实现REpresentational State Transfer（REST）接口，并且在过去三年中存储库上托管的数据集数量几乎翻了两番。为了跟上MW存储库的快速发展状态，'mwtab' Python库和包不断更新，以反映'mwTab'和JSON化格式的变化，并包含许多新的增强功能，包括与MW REST接口交互的方法，增强的格式验证功能，以及用于解析和搜索特定代谢物数据和元数据的高级功能。我们使用增强的格式验证功能来评估MW中所有可用的数据集，以促进存储库的管理和公平性。'mwtab' Python包现在正式发布为1.0.1版，并在GitHub和Python包索引（PyPI）上免费提供，并在Clear Berkeley Software Distribution（BSD）许可下提供文档。
The Metabolomics Workbench (MW) is a public scientific data repository consisting of experimental data and metadata from metabolomics studies collected with mass spectroscopy (MS) and nuclear magnetic resonance (NMR) analyses. MW has been constantly evolving; updating its ‘mwTab’ text file format, adding a JavaScript Object Notation (JSON) file format, implementing a REpresentational State Transfer (REST) interface, and nearly quadrupling the number of datasets hosted on the repository within the last three years. In order to keep up with the quickly evolving state of the MW repository, the ‘mwtab’ Python library and package have been continuously updated to mirror the changes in the ‘mwTab’ and JSONized formats and contain many new enhancements including methods for interacting with the MW REST interface, enhanced format validation features, and advanced features for parsing and searching for specific metabolite data and metadata. We used the enhanced format validation features to evaluate all available datasets in MW to facilitate improved curation and FAIRness of the repository. The ‘mwtab’ Python package is now officially released as version 1.0.1 and is freely available on GitHub and the Python Package Index (PyPI) under a Clear Berkeley Software Distribution (BSD) license with documentation available on ReadTheDocs.
登录
查看更多内容
影响因子：
8.6
作者：
Heller SR;McNaught A;Pletnev I;Stein S;Tchekhovskoi D
通讯作者：
Tchekhovskoi D
影响因子：
9.8
作者：
Spicer RA;Salek R;Steinbeck C
通讯作者：
Steinbeck C
影响因子：
14.9
作者：
Kim S;Chen J;Cheng T;Gindulyte A;He J;He S;Li Q;Shoemaker BA;Thiessen PA;Yu B;Zaslavsky L;Zhang J;Bolton EE
通讯作者：
Bolton EE
影响因子：
14.9
作者：
Kanehisa M;Araki M;Goto S;Hattori M;Hirakawa M;Itoh M;Katayama T;Kawashima S;Okuda S;Tokimatsu T;Yamanishi Y
通讯作者：
Yamanishi Y
影响因子：
--
作者：
Pundir S;Magrane M;Martin MJ;O'Donovan C;UniProt Consortium
通讯作者：
UniProt Consortium