ITR: Asynchronous Execution for Scalable Simulation of Cell Physiology

ITR：用于细胞生理学可扩展模拟的异步执行

• 批准号: 0326013
• 负责人: Scott Baden
• 金额: $ 55万
• 依托单位: University of California-San Diego
• 依托单位国家: 美国
• 项目类别: Continuing Grant
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-09-15 至 2007-08-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0326013&HistoricalAwards=false
• 关键词: ITR; Asynchronous; Execution; Scalable; Simulation

This project will develop algorithms, run time support, and software infrastructure for scalable biological modeling will be developed, based on MCell, a general Monte Carlo simulator of cellular microphysiology, and Tarragon, a run-time environment for optimized asynchronous parallel computing. This project matches the underlying asynchronous dynamics of Monte Carlo simulations to a corresponding model of execution and the ability to alter scheduling accordingly. Thus, the outcome will be novel programming methodology and a run-time library for large-scale biological simulations, and, more generally, increased knowledge about software techniques in support of scheduling and latency-tolerant formulation.

该项目将开发算法，运行时支持和可扩展的生物建模的软件基础设施将被开发，基于MCell，细胞微生理学的通用Monte Carlo模拟器，和Tarragon，优化异步并行计算的运行时环境。 该项目将蒙特卡罗模拟的底层异步动态与相应的执行模型和相应的调度能力相匹配。 因此，其结果将是新的编程方法和大规模生物模拟的运行时库，更普遍的是，增加了有关软件技术的知识，以支持调度和延迟容忍的制定。