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Predicting frequency dependent cross-relaxation rates from Molecular Dynamics simulations to provide a basis for a reliable interpretation of experimental NOE data

Predicting frequency dependent cross-relaxation rates from Molecular Dynamics simulations to provide a basis for a reliable interpretation of experimental NOE data
通过分子动力学模拟预测频率相关的交叉弛豫率,为实验 NOE 数据的可靠解释提供基础
批准号:
187094384
负责人:
Dr. Dietmar Paschek
金额:
$0.0万
依托单位国家:
德国
项目类别:
Priority Programmes
财政年份:
2010
资助国家:
德国
项目状态:
已结题
起止时间:
2009-12-31 至 2013-12-31

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中文摘要
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英文摘要
There is still a large degree of uncertainty about the detailed structure and dynamics of ionic liquids (ILs). In particular, how those liquids are organized at the molecular level in terms of intermolecular atom-atom contacts. It has been argued that specific intermolecular interactions matter, and thus might be employed for tuning properties of ILs. To resolve those issues, it is essential to have a profound understanding of the detailed intermolecular structure and dynamics of ILs. Exploiting the Nuclear Overhauser Effect to the fullest could be instrumental in providing such a structural and dynamical picture for those molecular details. However, the situation for a neat ionic liquids is substantially different than for example for the case of large globular proteins. In ILs the conformational diversity is large, the lifetimes of encounter-configurations are typically short, and nonidealities in translatoric diffusion and reorientational dynamics have to be taken into account. Moreover, the specific nanoscale structure of ILs, imposed by the alternating cation/anion charge pattern has to be considered. Diffusion based formulae, developed for simple liquids, cannot be assumed to be adequate. We propose to use molecular dynamics simulations of realistic all atom models of imidazolium based ionic liquids with different counter ions, to fully characterize the frequency dependent cross-relaxation phenomena for particular meaningful spin-combinations. Temperature variation will be used to better characterize and dissect the influence of the structural and dynamical aspects of the intra- and inter-molecular relaxation processes. Moreover, the addition of molecules, such as chloroform, will be used to study the possible preferential interactions of those additives with anions or cations. Our aim is to lay a reliable foundation for the interpretation of experimentally determined NOEs carried out by our collaborator Ralf Giernoth within the SPP. In addition, the simulations will also help to suggest and design future NMR experiments of e.g.varying isotopic composition to verify and test the simulation results.
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Influence of the pore structure on the membrane based separation of components from natural gas and accompanying gas
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转录延伸因子参与粗糙脉孢菌生物钟基因frequency表达调控分子机制的研究
  • 批准号:
    --
  • 项目类别:
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  • 批准年份:
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  • 负责人:
    穆燕
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    50.0万元
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    孔新兵
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粗糙脉孢菌生物钟基因frq转录抑制因子的筛选及其作用机制研究
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    31330004
  • 项目类别:
    重点项目
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  • 批准年份:
    2013
  • 负责人:
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