EAGER: Characterizing biological function across a persistent oceanographic "hotspot" in the NE Pacific Ocean

EAGER：描述东北太平洋持久海洋“热点”的生物功能

• 批准号: 1205232
• 负责人: Anitra Ingalls
• 金额: $ 30万
• 依托单位: University of Washington
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-01-01 至 2012-12-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1205232&HistoricalAwards=false
• 关键词: EAGER; Characterizing; biological; function; across

Intellectual Merit: Every cubic centimeter of oceanic water is home to millions of single celled organisms that are the engines of the majority of biological activity in the ocean. These organisms form functional communities that are key to our understanding of how the ocean benefits us through providing ecosystem services and hinders us through disease and harmful algal blooms. The underlying causes that shape the distribution and activity of organisms remain elusive, resulting in impaired predictive ability. This project will bring oceanographic research into the post-genomic era by joining genomics and transciptomics with state of the art tools in proteomics, metabolomics and trace metal analyses to understand the causes for observed biogeography and biological activity. The project is a multi-faceted study of the structure and function of microbial communities along a transect in the Northeast Pacific that crosses an oceanographic "hotspot" that results from the mixing of high nutrient low chlorophyll waters with coastal iron rich waters. This project is appropriate as an EAGER award due to the high risk associated with combining numerous cutting edge techniques carried out by a highly multidisciplinary team for the first time. The team includes individuals in the geochemistry community that are accustomed to viewing the end result of biological activity on a large spatial and time integrated scale, and molecular ecologists who interrogate organisms and communities for their evolutionary roots, metabolic capabilities and physiological status. The project is a test bed for an integrated study that includes a complete set of "omics" data along with cell quotas for trace metals. The project will generate a large data set that will be shared with the broader community as well as analyzed by the PIs. Cells in the environment carry out their metabolic processes in the context of a chemical environment. By interrogating cellular functions in the form of the proteome, metabolome and metallome, the investigators are asking the cells to tell us what they sense in the environment and how they respond to what they are sensing. These findings will represent a major step toward redefining how we do oceanography such that a complete understanding of microbial communities can lead us to predictions of how the ocean will respond to ongoing change.Broader impacts:This project follows on an ocean carbon and biogeochemistry workshop that discussed how molecular ecologists might collaborate with geochemists to better understand biogeochemical processes in the world oceans. It is expected that successful completion of this proof of concept cruise will lead to larger interdisciplinary program with the ongoing U.S. Geotraces program. This particular project will demonstrate how using -omics approaches, in conjunction with metagenomic and geochemical sampling, can provide the key to linking structure with function across ocean biomes. As part of this project there will be training for the next generation of oceanographers to work in a multidisciplinary community. Undergraduate students will participate on the cruise and will be entrained in research projects using the data generated. A large data set will be made available to the entire oceanographic community, so that participation will be considerably larger than the small group of investigators participating in the cruise.

智力优势：每立方厘米的海水都是数百万单细胞生物的家园，它们是海洋中大多数生物活动的引擎。这些生物形成了功能群落，它们是我们理解海洋如何通过提供生态系统服务使我们受益以及如何通过疾病和有害藻华阻碍我们的关键。塑造生物分布和活动的根本原因仍然难以捉摸，导致预测能力受损。该项目将把基因组学和转录组学与蛋白质组学、代谢组学和痕量金属分析等最先进的工具结合起来，将海洋学研究带入后基因组时代，以了解观察到的生物地理和生物活动的原因。该项目是对东北太平洋横断面微生物群落结构和功能的多方面研究，该横断面跨越了一个海洋学“热点”，该“热点”是由高营养低叶绿素水域与沿海富铁水域混合而成的。由于该项目首次由一个高度多学科的团队结合了众多尖端技术，因此具有很高的风险，因此该项目适合作为EAGER奖项。该团队包括地球化学领域的个人，他们习惯于在大的空间和时间综合尺度上观察生物活动的最终结果，以及分子生态学家，他们询问生物体和群落的进化根源、代谢能力和生理状态。该项目是一个综合研究的试验台，该研究包括一整套“组学”数据以及微量金属的细胞配额。该项目将生成一个大型数据集，将与更广泛的社区共享，并由pi进行分析。环境中的细胞在化学环境中进行其代谢过程。通过以蛋白质组、代谢组和金属组的形式询问细胞功能，研究人员要求细胞告诉我们它们在环境中感知到什么，以及它们如何对感知到的东西做出反应。这些发现将是重新定义我们如何做海洋学的重要一步，这样对微生物群落的全面了解可以引导我们预测海洋将如何应对正在发生的变化。更广泛的影响：该项目是在一个海洋碳和生物地球化学研讨会之后进行的，该研讨会讨论了分子生态学家如何与地球化学家合作，以更好地了解世界海洋中的生物地球化学过程。预计这次概念验证的成功完成将与正在进行的美国Geotraces项目一起带来更大的跨学科项目。这个特殊的项目将展示如何使用组学方法，结合宏基因组学和地球化学采样，可以提供连接海洋生物群落结构与功能的关键。作为该项目的一部分，将培训下一代海洋学家在多学科社区工作。本科生将参加这次巡航，并将利用所产生的数据进行研究项目。整套大型数据将提供给整个海洋学界，因此参与的人数将大大超过参加这次巡航的一小群调查人员。