MRI: Acquisition of an Illumina HiSeq2000 as a core sequencing instrument for genomics and gene expression research

MRI：购买 Illumina HiSeq2000 作为基因组学和基因表达研究的核心测序仪器

• 批准号: 1229046
• 负责人: Michael Axtell
• 金额: $ 56.94万
• 依托单位: Pennsylvania State Univ University Park
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-10-01 至 2015-09-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1229046&HistoricalAwards=false
• 关键词: MRI; Acquisition; Illumina; HiSeq2000; core

This Major Research Instrumentation award supports the purchase of an Illumina HiSeq2500 DNA sequencing instrument for the Genomics Core Facility at Penn State's University Park campus. Sequencing of DNA is a key component of modern life sciences research. In the last decade, technologies for DNA sequencing have advanced at an astonishing rate. In that time frame, data output per instrument "run" has increased by more than a trillion-fold. Consequently, the amount of DNA information available has skyrocketed, enabling revolutionary advances across all of the biosciences. The Illumina HiSeq2500 is the most powerful sequencing instrument available to date, both in terms of data output per unit time, and cost per DNA-base sequenced. Its very high quality, relatively long read lengths, and well-established sequencing chemistry allow the maximum experimental flexibility. It is capable of generating DNA sequence data to allow de novo genome assemblies, as well as re-sequencing and transcriptome studies. Installation of this instrument into the Genomics Facility will significantly enhance life science research at Penn State and beyond, particularly in three broad areas: Genomics and gene expression of non-model organisms, genomics of multispecies interactions, and regulation of gene expression. Given the flexibility and robust performance of this instrument, it is likely that many additional, as yet unforeseen areas of study will be enhanced by this instrument.This instrument's capabilities will dramatically enhance life sciences research at Penn State. In addition, it will enhance interdisciplinary scientific training for Penn State researchers at the undergraduate, graduate, and post-doctoral levels. It's use and data will be integrated into existing hands-on graduate training programs and courses, and used as part of the regular series of workshops offered by the Genomics Core Facility. Access and training will be provided, through several existing programs, to several populations of students who are currently under-represented in the scientific enterprise. Experiments conducted on this instrument will also be used to enhance Penn State's continuing involvement with a consortium of predominantly undergraduate institutions for scientific training.

这项重大研究仪器奖支持为宾夕法尼亚州立大学大学公园校园的基因组学核心设施购买Illumina HiSeq 2500 DNA测序仪。 DNA测序是现代生命科学研究的重要组成部分。 在过去的十年中，DNA测序技术以惊人的速度发展。 在这段时间内，每台仪器“运行”的数据输出增加了一万亿倍以上。 因此，可用的DNA信息量激增，使所有生物科学都取得了革命性的进展。 Illumina HiSeq2500是迄今为止最强大的测序仪器，无论是在单位时间的数据输出方面，还是在每个DNA碱基测序的成本方面。 其非常高的质量、相对较长的读取长度和完善的测序化学允许最大的实验灵活性。 它能够生成DNA序列数据，以允许从头基因组组装，以及重新测序和转录组研究。 将该仪器安装到基因组学设施中将显著增强宾夕法尼亚州立大学及其他地区的生命科学研究，特别是在三个广泛的领域：非模式生物的基因组学和基因表达，多物种相互作用的基因组学和基因表达调控。 鉴于该仪器的灵活性和强大的性能，它很可能是许多额外的，尚未预见的研究领域将通过该仪器得到增强。该仪器的能力将大大提高宾夕法尼亚州立大学的生命科学研究。 此外，它还将加强对宾夕法尼亚州立大学本科、研究生和博士后研究人员的跨学科科学培训。 它的使用和数据将被整合到现有的实践研究生培训计划和课程中，并作为基因组学核心设施提供的定期系列研讨会的一部分。 将通过几个现有的方案，向目前在科学事业中代表性不足的几个学生群体提供访问和培训。 在该仪器上进行的实验也将用于加强宾夕法尼亚州立大学与主要由本科院校组成的科学培训联盟的持续参与。