A Course-Based Undergraduate Conference Experience in Computational Biology
计算生物学课程本科会议经验
基本信息
- 批准号:1643361
- 负责人:
- 金额:$ 1.36万
- 依托单位:
- 依托单位国家:美国
- 项目类别:Standard Grant
- 财政年份:2016
- 资助国家:美国
- 起止时间:2016-09-01 至 2017-10-31
- 项目状态:已结题
- 来源:
- 关键词:
项目摘要
Research experiences for undergraduates have been enormously successful in recruiting and engaging students within STEM disciplines. However, many institutions lack the resources to offer such experiences to a majority of their undergraduates. Course-based undergraduate research experiences (CUREs) integrate research activities within the curriculum, engaging a larger subset of undergraduates and reporting similar learning outcomes. Conference attendance is a specific example of a research experience in which few undergraduates get to engage. A natural extension of a CURE is a course-based undergraduate conference experience. Reed College, a primarily undergraduate institution in Portland OR, will offer an interdisciplinary upper-level Computational Systems Biology course in the fall of 2016 (anticipated enrollment of twelve students). This award will allow the class to attend the ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM-BCB 2016) in Seattle, WA. ACM-BCB is an ideal venue for a conference experience due to the quality of presented work, relevance of the conference topics to the course, and geographic proximity to Reed. ACM-BCB will be integrated into the course syllabus: students will read and discuss papers, meet and interact with presenters, and extend ideas from the conference as part of a multi-week programming based final project. Students will submit their research work as posters to ACM-BCB and the associated workshops. The research concerns different ways to model signal transduction pathways using graphs and graph extensions. The broader impacts of this proposal are multi-faceted. First, it will promote interdisciplinary research by educating students about computer science applications within biology. Second, it will empower students with a unique opportunity that few undergraduates obtain, leading to an anticipated increased confidence in engaging in science and scientific research. Third, it will provide an opportunity for PIs from other institutions to interact with strong interdisciplinary undergraduates. Reed produces the third largest institutional-yield ratio of baccalaureates who obtain PhDs in the Math & Sciences, and ACM-BCB provides a powerful networking opportunity.The proposed travel is also a potential mechanism for recruiting underrepresented groups in STEM. The introductory computational biology courses in 2015-2016 included students from all years (freshmen through seniors) majoring in eight different areas (including four outside the Division of Math & Natural Sciences). Further, 60% of the students who completed the course were women, a group traditionally underrepresented in computer science. Thus, the pool of students eligible for the upper-level course (and the proposed conference travel) include a group that is diverse in terms of gender, class year, and declared major.
本科生的研究经验在STEM学科的招生和吸引学生方面取得了巨大的成功。 然而,许多机构缺乏资源,无法为大多数本科生提供这种经验。基于课程的本科生研究经验(CURES)将研究活动整合到课程中,吸引了更大的本科生子集,并报告了类似的学习成果。参加会议是一个研究经验的具体例子,很少有本科生参与。 CURE的自然延伸是基于课程的本科生会议体验。里德学院,在波特兰或主要的本科院校,将在2016年秋季提供一个跨学科的高级计算系统生物学课程(预计招收12名学生)。 这个奖项将允许类参加ACM会议生物信息学,计算生物学和健康信息学(ACM-BCB 2016)在西雅图,华盛顿州。 ACM-BCB是一个理想的会议场所,由于所提出的工作质量,会议主题的相关性,当然,地理位置接近里德。 ACM-BCB将被整合到课程大纲中:学生将阅读和讨论论文,与演讲者会面和互动,并将会议的想法作为基于多周编程的最终项目的一部分。学生将提交他们的研究工作作为海报ACM-BCB和相关的研讨会。该研究涉及使用图和图扩展来建模信号转导通路的不同方法。这一提议的广泛影响是多方面的。首先,它将通过教育学生生物学中的计算机科学应用来促进跨学科研究。其次,它将赋予学生一个独特的机会,很少有本科生获得,导致预期的信心增加从事科学和科学研究。第三,它将提供一个机会,从其他机构的PI与强大的跨学科本科生互动。里德商学院在获得数学科学博士学位的本科生中占第三位,ACM-BCB提供了一个强大的网络机会。拟议中的旅行也是招募STEM中代表性不足的群体的潜在机制。 2015-2016年的计算生物学入门课程包括来自所有年级(大一到大四)的学生,他们主修八个不同的领域(包括数学自然科学系以外的四个领域)。 此外,完成课程的学生中有60%是女性,这是一个传统上在计算机科学中代表性不足的群体。 因此,有资格参加高级课程(和拟议的会议旅行)的学生群体包括一个在性别、学年和宣布的专业方面多样化的群体。
项目成果
期刊论文数量(4)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks
使用获奖子超网络对细胞信号网络进行建模
- DOI:10.1145/2975167.2985655
- 发表时间:2016
- 期刊:
- 影响因子:0
- 作者:Potter, Barney;Fix, James;Ritz, Anna
- 通讯作者:Ritz, Anna
Reconstructing Neuronal Signaling Pathways With the Potential for Disruption in Schizophrenia
重建具有破坏精神分裂症潜力的神经信号通路
- DOI:10.1145/2975167.2985662
- 发表时间:2016
- 期刊:
- 影响因子:0
- 作者:Ezell, Nicole;Ritz, Anna
- 通讯作者:Ritz, Anna
Lowering the Barrier for Undergraduates to Learn about Computational Research through a Course-Based Conference Experience
通过基于课程的会议体验降低本科生学习计算研究的障碍
- DOI:10.1109/respect49803.2020.9272501
- 发表时间:2020
- 期刊:
- 影响因子:0
- 作者:Lazarte, Amy R.;Ritz, Anna
- 通讯作者:Ritz, Anna
Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny
非洲慈鲷系统发育中的拷贝数变异和适应性进化辐射
- DOI:10.1145/2975167.2985656
- 发表时间:2016
- 期刊:
- 影响因子:0
- 作者:Menzel, Karl;Renn, Suzy C.;Ritz, Anna
- 通讯作者:Ritz, Anna
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Anna Ritz其他文献
Finite-temperature properties of string-net models
弦网模型的有限温度特性
- DOI:
- 发表时间:
2024 - 期刊:
- 影响因子:0
- 作者:
Anna Ritz;Jean;Steven H. Simon;Julien Vidal - 通讯作者:
Julien Vidal
Effective models for dense vortex lattices in the Kitaev honeycomb model
Kitaev 蜂窝模型中密集涡晶格的有效模型
- DOI:
10.1103/physrevb.109.115107 - 发表时间:
2023 - 期刊:
- 影响因子:0
- 作者:
David J. Alspaugh;Jean;Anna Ritz;Julien Vidal - 通讯作者:
Julien Vidal
Posttraumatic stress disorder symptomology as measured by PCL-5 and its relationships to resilience, hostility and stress among paramedics and social professionals.
通过 PCL-5 测量的创伤后应激障碍症状及其与护理人员和社会专业人员的复原力、敌意和压力的关系。
- DOI:
- 发表时间:
2024 - 期刊:
- 影响因子:4.1
- 作者:
Anna Alexandrov;Nóra Román;Petra Kovács;Anna Ritz;Mónika Kissné Viszket;Zsuzsa Kaló - 通讯作者:
Zsuzsa Kaló
Wegner-Wilson loops in string nets
弦网中的韦格纳-威尔逊环
- DOI:
10.1103/physrevb.103.075128 - 发表时间:
2020 - 期刊:
- 影响因子:3.7
- 作者:
Anna Ritz;J. Fuchs;J. Vidal - 通讯作者:
J. Vidal
Anna Ritz的其他文献
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{{ truncateString('Anna Ritz', 18)}}的其他基金
Collaborative Research: BeeHive: A Cross-Problem Benchmarking Framework for Network Biology
合作研究:BeeHive:网络生物学的跨问题基准框架
- 批准号:
2233969 - 财政年份:2023
- 资助金额:
$ 1.36万 - 项目类别:
Continuing Grant
NSF Student Travel Grant for the 2022 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)
NSF 学生旅费资助 2022 年计算网络生物学国际研讨会:建模、分析和控制 (CNB-MAC)
- 批准号:
2230929 - 财政年份:2022
- 资助金额:
$ 1.36万 - 项目类别:
Standard Grant
CAREER: Network-Based Signaling Pathway Analysis: Methods and Tools for Turning Theory into Practice
职业:基于网络的信号通路分析:将理论转化为实践的方法和工具
- 批准号:
1750981 - 财政年份:2018
- 资助金额:
$ 1.36万 - 项目类别:
Continuing Grant
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