Collaborative Research: An Integrated Experimental and Computational Approach to Discover Biomechanical Mechanisms of Leaf Epidermal Morphogenesis
Collaborative Research: An Integrated Experimental and Computational Approach to Discover Biomechanical Mechanisms of Leaf Epidermal Morphogenesis
批准号:
1715544
负责人:
Daniel Szymanski
金额:
$91.41万
依托单位:
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2017
资助国家:
美国
项目状态:
已结题
起止时间:
2017-08-01 至 2023-07-31
中文摘要
叶片的大小和形状是影响作物产量的重要农艺性状。单个细胞的生长共同决定了叶的形态,生物学中的一个主要挑战是了解细胞成分如何使细胞壁形成图案,从而影响细胞生长的局部速率和方向。该项目的重点是发现形成叶表皮的外层细胞的生长控制机制。表皮既是保护叶子的防水层,又是影响叶子大小和形状的生长生物力学外壳。该项目旨在了解细胞信号和细胞骨架模式是如何在粘附细胞中控制的,以及局部生长如何影响组织或整个叶片性状。 更广泛影响力活动包括对团队所有成员(包括本科生和高中生)进行跨学科培训。 还将为内布拉斯加州青年科学家计划开发一个K-12夏令营模块。拟南芥叶表皮形态发生系统是理想的重大突破。然而,由于缺乏可靠的表型分析方法来定义遗传途径和分析细胞骨架,细胞壁和细胞几何形状之间发生的非直观的生物力学相互作用,进展缓慢。跨学科研究团队将创建一种新的实验和计算方法,以发现纤维素微纤维的微管依赖性图案如何驱动表皮的极化生长。由此产生的计算模型将预测细胞如何在细胞壁中产生空间和时间的异质性,这些异质性驱动这些拼图形状的细胞的交叉生长。重要的是,微管细胞骨架上细胞壁的生物力学反馈控制是植物发育的一般特征。拟议的研究将产生数据并创建集成的计算模型,揭示细胞壁应力模式如何影响皮质微管和组织形态发生。
英文摘要
The size and shape of leaves are important agricultural traits that strongly influence crop yield. The growth of individual cells collectively determine leaf morphology, and a major challenge in biology is to understand how cellular constituents pattern the cell wall to influence local rates and directions of cell growth. This project focuses on discovering the growth control mechanisms of the outer layer of cells that form the leaf epidermis. The epidermis serves both as a waterproof layer that protects the leaf and as a growing biomechanical shell that influences the size and shape of the leaf. This project aims to understand how cell signaling and cytoskeletal patterning is controlled among adherent cells and how local growth can scale to influence tissue or whole leaf traits. The Broader Impact activities include interdisciplinary training for all members of the team (including undergraduates and high school students). A K-12 summer camp module will also be developed for the Young Nebraska Scientist Program. The Arabidopsis leaf epidermal morphogenesis system is ideally suited for major breakthroughs. However, progress has been slow because of the lack of reliable phenotyping methods to define genetic pathways and analyze the non-intuitive biomechanical interactions that occur among the cytoskeleton, cell wall, and cell geometry. The interdisciplinary research team will create a new experimental and computational approach to discover how microtubule-dependent patterning of cellulose microfibrils drives polarized growth in the epidermis. The resulting computational models will make predictions about the how cells generate the spatial and temporal heterogeneities in the cell wall that drive interdigitated growth of these jig-saw-puzzle shaped cells. Importantly, biomechanical feedback control of the cell wall on the microtubule cytoskeleton is a general feature of plant development. The proposed research will generate data and create integrated computational models that reveal how cell wall stress patterns influence cortical microtubules and tissue morphogenesis.
期刊论文(11)
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DOI:
10.1016/j.cub.2018.05.076
发表时间:
2018-08
期刊:
Current Biology
影响因子:
9.2
作者:
[M. Yanagisawa;J. Alonso;D. Szymanski]
通讯作者:
M. Yanagisawa;J. Alonso;D. Szymanski
Accurate 3D Cell Segmentation using Deep Feature and CRF Refinement
使用深度特征和 CRF 细化进行准确的 3D 细胞分割
DOI:
--
发表时间:
2018
期刊:
IEEE Signal Processing Society
影响因子:
--
作者:
[Jiang, Jianxiang]
通讯作者:
Jiang, Jianxiang
Reassessing the Roles of PIN Proteins and Anticlinal Microtubules during Pavement Cell Morphogenesis
DOI:
10.1104/pp.17.01554
发表时间:
2018-01-01
期刊:
PLANT PHYSIOLOGY
影响因子:
7.4
作者:
[Belteton, Samuel A., Sawchuk, Megan G., Szymanski, Daniel B.]
通讯作者:
Szymanski, Daniel B.
DOI:
10.1104/pp.17.01519
发表时间:
2018-01-01
期刊:
PLANT PHYSIOLOGY
影响因子:
7.4
作者:
[Szymanski, Dan, Staiger, Christopher J.]
通讯作者:
Staiger, Christopher J.
DOI:
10.1104/pp.17.01777
发表时间:
2018-01
期刊:
Plant Physiology
影响因子:
7.4
作者:
[D. Szymanski;D. Bassham;T. Munnik;W. Sakamoto]
通讯作者:
D. Szymanski;D. Bassham;T. Munnik;W. Sakamoto
共 7 条
Transitions: Creating a Trans-Disciplinary Approach to Discover Multi-Scale Control Mechanisms of Plant Morphogenesis
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批准号:2148122
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项目类别:Continuing Grant
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资助金额:$74.99万
-
财政年份:2022
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负责人:Daniel Szymanski
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依托单位:
RESEARCH-PGR: A Systems Biology Approach to Enable Cotton Fiber Engineering
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批准号:1951819
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项目类别:Standard Grant
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资助金额:$229.8万
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财政年份:2020
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负责人:Daniel Szymanski
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依托单位:
2018 Plant Cell Dynamics (PCD) Meeting; May 29-June 1, 2018; University of Wisconsin-Madison
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批准号:1834879
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项目类别:Standard Grant
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资助金额:$1.2万
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财政年份:2018
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负责人:Daniel Szymanski
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依托单位:
Conference: Plant Cell Dynamics 2017; May 30-June 2; Madison, WI
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批准号:1738300
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项目类别:Standard Grant
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资助金额:$1.24万
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财政年份:2017
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负责人:Daniel Szymanski
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依托单位:
2015 Plant Cell Dynamics Conferenc; Madison, WI - June 16-19, 2015
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批准号:1539987
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项目类别:Standard Grant
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资助金额:$1.0万
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财政年份:2015
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负责人:Daniel Szymanski
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依托单位:
Conference: 2014 Plant Cell Dynamics Meeting. June 4-7, Madison Wisconsin.
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批准号:1442067
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项目类别:Standard Grant
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资助金额:$0.76万
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财政年份:2014
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负责人:Daniel Szymanski
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依托单位:
Conference: 2013 Midwest Plant Cell Dynamics Meeting being held June 5-7, 2013 in Madison, WI
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批准号:1339477
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项目类别:Standard Grant
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资助金额:$0.51万
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财政年份:2013
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负责人:Daniel Szymanski
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依托单位:
Conference: Midwest Plant Cell Dynamics Meeting being held June 20-22, 2012 in Wisconsin, Madison
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批准号:1238380
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项目类别:Standard Grant
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资助金额:$0.99万
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财政年份:2012
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负责人:Daniel Szymanski
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依托单位:
EAGER: Collaborative Research: Novel micromechanical and computational approaches to discover the mechanisms of symmetry breaking and polarized growth in dicot pavement cells
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批准号:1249652
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项目类别:Continuing Grant
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资助金额:$17.0万
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财政年份:2012
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负责人:Daniel Szymanski
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依托单位:
Novel Quantitative Proteomic Methods to Discover and Localize Endogenous Protein Complexes
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批准号:1127027
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项目类别:Standard Grant
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资助金额:$60.5万
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财政年份:2011
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负责人:Daniel Szymanski
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依托单位:
Collaborative Research: SPK1-ROP Signaling at the ER surface: Implications for ERES Assembly and Morphogenesis
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批准号:1121893
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项目类别:Continuing Grant
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资助金额:$81.89万
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财政年份:2011
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负责人:Daniel Szymanski
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依托单位:
SPIKE1: Novel Mechanisms of ROP Activation and Actin-Based Morphogenesis
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批准号:0640872
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项目类别:Continuing Grant
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资助金额:$0.0万
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财政年份:2007
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负责人:Daniel Szymanski
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依托单位:
Mechanisms of Plant Cell Morphogenesis: ARP2/3 Function and Trichome Distortion in Arabidopsis
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批准号:0416546
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项目类别:Continuing Grant
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资助金额:$0.0万
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财政年份:2004
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负责人:Daniel Szymanski
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依托单位:
A Genetic Approach to Understanding Cell Morphogenesis
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批准号:0110817
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项目类别:Standard Grant
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资助金额:$33.0万
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财政年份:2001
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负责人:Daniel Szymanski
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依托单位:
国内基金
海外基金
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Research on Quantum Field Theory without a Lagrangian Description
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批准号:24ZR1403900
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项目类别:省市级项目
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资助金额:--
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批准年份:2024
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负责人:SATOSHI NAWATA
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依托单位:
Cell Research
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批准号:31224802
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项目类别:专项基金项目
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资助金额:24.0万元
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批准年份:2012
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负责人:程磊
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依托单位:
Cell Research
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批准号:31024804
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项目类别:专项基金项目
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资助金额:24.0万元
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批准年份:2010
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负责人:程磊
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依托单位:
Cell Research (细胞研究)
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批准号:30824808
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项目类别:专项基金项目
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资助金额:24.0万元
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批准年份:2008
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负责人:张爱兰
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依托单位:
Research on the Rapid Growth Mechanism of KDP Crystal
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批准号:10774081
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项目类别:面上项目
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资助金额:45.0万元
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批准年份:2007
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负责人:滕冰
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依托单位: