Exploiting dynamics and cell-to-cell variation in metabolic engineering

利用代谢工程中的动力学和细胞间变异

• 批准号: 1804096
• 负责人: Mary Dunlop
• 金额: $ 30.96万
• 依托单位: Trustees of Boston University
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2018
• 资助国家: 美国
• 起止时间: 2018-07-01 至 2022-06-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1804096&HistoricalAwards=false
• 关键词: Exploiting; dynamics; cell; variation; metabolic

Cells can be engineered to produce products ranging from fuels to pharmaceuticals. However, the pathways that produce these products often reduce cell yields and increase costs. Turning these pathways on and off in some pattern might simultaneously reduce the burden and increase production. Conceptually, this approach is similar to a work week and weekend. It is based on the idea that a combination of work and time off can result in higher overall productivity than sustained, constant effort. The research is complemented by educational and training opportunities for high school students and undergraduates. These students will be prepared to participate in a high-technology workforce.Gene expression is noisy, leading to variation between cells in the absence of genetic diversity. Cells exploit that variability to optimize resource use. This calls into question whether introducing dynamics and noise in expression of genes could be beneficial. This project focuses on efflux pumps that export the monoterpene pinene. Pumps export toxic substrates and improve biosynthetic yields, but overexpressing them burdens the cell. Diversifying pump levels may allow populations to exploit these benefits and costs. The project is organized around two objectives: (1) to quantify single-cell differences in efflux and the duration of variability, and (2) to compare pinene production in strains with dynamic versus static pump expression. Time lapse microscopy coupled with microfluidics and quantitative image processing will be used to characterize pump variability. Pinene yields between strains with different approaches to pump expression will also be measured. Stochastic mathematical modeling to predict the impact of pump expression dynamics will complement the experiments. Overall, this project will test whether it is possible to exploit cell-to-cell variation in metabolic engineering to enhance production.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

细胞可以被改造成生产从燃料到药品的各种产品。然而，生产这些产品的途径往往会降低细胞产量并增加成本。以某种方式开启和关闭这些途径，可能会同时减轻负担和增加产量。从概念上讲，这种方法类似于工作日和周末。它基于这样一种理念，即工作和休假相结合可以产生比持续不断的努力更高的整体生产率。这项研究还为高中生和本科生提供了教育和培训机会。这些学生将准备参加高科技工作。基因表达是嘈杂的，在缺乏遗传多样性的情况下导致细胞之间的差异。细胞利用这种可变性来优化资源使用。这让人质疑，在基因表达中引入动力学和噪音是否有益。该项目的重点是出口单萜烯的喷射泵。泵输出有毒底物并提高生物合成产量，但过度表达它们会给细胞带来负担。多样化的抽水水平可能会让人们利用这些好处和成本。该项目围绕两个目标组织：(1)量化单细胞外排的差异和变异性的持续时间，(2)比较具有动态和静态泵表达的菌株的Pinene产量。时间推移显微镜结合微流控技术和定量图像处理技术将用于表征泵的可变性。还将测量具有不同泵表达方法的菌株之间的蒎烯产量。用随机数学模型来预测泵动态表达的影响将是对实验的补充。总体而言，该项目将测试是否有可能利用代谢工程中的细胞间差异来提高产量。该奖项反映了NSF的法定使命，并通过使用基金会的智力优势和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Longitudinal single-cell chemical imaging of engineered strains reveals heterogeneity in fatty acid production

• DOI: 10.1101/2021.07.26.453865
• 发表时间: 2021-07
• 期刊: bioRxiv
• 作者: Nathan Tague;Haonan Lin;Jean-Baptiste Lugagne;Owen M. O’Connor;Deeya Burman;Wilson W. Wong;Ji‐Xin Cheng;M. Dunlop

Controlling and exploiting cell-to-cell variation in metabolic engineering

控制和利用代谢工程中的细胞间变异

• DOI: 10.1016/j.copbio.2018.08.013
• 发表时间: 2019
• 期刊: Current Opinion in Biotechnology
• 影响因子: 7.7
• 作者: Wang, Tiebin;Dunlop, Mary J
• 通讯作者: Dunlop, Mary J