Ultrahigh-Throughput Single-Molecule Spectroscopy and Multidimensional Super-Resolution Microscopy

超高通量单分子光谱和多维超分辨率显微镜

• 批准号: 2203518
• 负责人: Ke Xu
• 金额: $ 45万
• 依托单位: University of California-Berkeley
• 依托单位国家: 美国
• 项目类别: Continuing Grant
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-09-01 至 2025-08-31
• 项目状态: 未结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=2203518&HistoricalAwards=false
• 关键词: Ultrahigh; Throughput; Single; Molecule; Spectroscopy

With support from the Chemical Measurement and Imaging (CMI) Program in the Division of Chemistry, Professor Ke Xu and his research group at the University of California-Berkeley are developing ultrahigh-throughput approaches for single-molecule spectroscopy and multidimensional super-resolution microscopy. The rise of super-resolution microscopy over the past decade has revolutionized how researchers study chemical, biological, and materials systems at the nanometer scale. This project extends super-resolution microscopy to high-dimensional measurements in order to enable new capabilities for chemical imaging at the single-molecule level. New approaches include the use of expandable hydrogels to control diffusion, incorporation of microfluidic techniques, and the application of machine learning approaches to analyze data from the high-throughput measurements. The measurements enabled by this research have the potential to reveal new knowledge about the behavior of single molecules and to provide new tools and concepts that will benefit diverse research fields in fundamental ways. Moreover, the project provides advanced student training in modern experimental technologies and big-data analysis methods that are increasingly important skills for employment in both academia and industry. The project also supports Professor Xu in providing an inclusive environment through his commitment to teaching, mentoring, and outreach activities.The rise of super-resolution microscopy based on the detection of single-molecule fluorescence, often known as single-molecule localization microscopy (SMLM), has revolutionized the study of chemical, biological, and materials systems over the past decade. In this project, the research team led by Professor Xu is developing new experimental approaches to enable high-dimensional and high-throughput measurements of single-molecule properties in order to expand the capabilities of SMLM. In addition to experimental approaches that take advantage of expandable hydrogels and microfluidic techniques to record diffusion rates and fluorescence spectra for a very large number of single molecules, the team is also working to apply machine learning algorithms to analyze the data from the ultrahigh-throughput single-molecule spectroscopy measurements for millions of molecules. Through the integration of these diverse techniques, the project aims to provide high temporal resolution for recording the fast dynamics of untethered single molecules, to enable the extraction of high-dimensional molecular information from single-molecule images for super-resolution mapping, and to elucidate size effects in macromolecule diffusion. Broader impacts of the work include potential applications of ultrahigh-throughput and multidimensional single-molecule measurements across a wide range of research areas. Students working on the project also gain valuable cross-disciplinary training based on the new knowledge, tools, and concepts that are being developed.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

在化学系化学测量和成像(CMI)计划的支持下，加州大学伯克利分校的徐克教授和他的研究小组正在开发用于单分子光谱和多维超分辨率显微镜的超高通量方法。在过去的十年中，超分辨率显微镜的兴起彻底改变了研究人员在纳米尺度上研究化学、生物和材料系统的方式。该项目将超分辨率显微镜扩展到高维测量，以便在单分子水平上实现化学成像的新能力。新的方法包括使用可膨胀水凝胶来控制扩散，结合微流控技术，以及应用机器学习方法来分析来自高通量测量的数据。这项研究实现的测量有可能揭示关于单分子行为的新知识，并提供新的工具和概念，将在根本上造福于不同的研究领域。此外，该项目还为学生提供现代实验技术和大数据分析方法方面的高级培训，这些技能在学术界和工业界的就业中都越来越重要。该项目还通过致力于教学、指导和推广活动，支持徐教授提供一个包容的环境。基于单分子荧光检测的超分辨率显微镜的兴起，通常被称为单分子定位显微镜(SMLM)，在过去的十年里彻底改变了化学、生物和材料系统的研究。在这个项目中，徐教授领导的研究团队正在开发新的实验方法，以实现对单分子性质的高维和高通量测量，以扩展SMLM的能力。除了利用可膨胀水凝胶和微流控技术记录大量单分子的扩散速度和荧光光谱的实验方法外，该团队还在努力应用机器学习算法来分析数百万分子的超高通量单分子光谱测量数据。通过整合这些不同的技术，该项目旨在提供高时间分辨率，以记录不受束缚的单分子的快速动力学，能够从单分子图像中提取高维分子信息用于超分辨率绘图，并阐明大分子扩散中的尺寸效应。这项工作的更广泛影响包括超高通量和多维单分子测量在广泛研究领域的潜在应用。参与该项目的学生还可以获得基于正在开发的新知识、工具和概念的有价值的跨学科培训。该奖项反映了NSF的法定使命，并通过使用基金会的智力优势和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Fluorogenic Dimers as Bright Switchable Probes for Enhanced Super-Resolution Imaging of Cell Membranes

• DOI: 10.1021/jacs.2c07542
• 发表时间: 2022-09-26
• 期刊: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
• 影响因子: 15
• 作者: Aparin, Ilya O.;Yan, Rui;Klymchenko, Andrey S.
• 通讯作者: Klymchenko, Andrey S.

Size-Dependent Suppression of Molecular Diffusivity in Expandable Hydrogels: A Single-Molecule Study

可膨胀水凝胶中分子扩散性的尺寸依赖性抑制：单分子研究

• DOI: 10.1021/acs.jpcb.3c00761
• 发表时间: 2023
• 期刊: The Journal of Physical Chemistry B
• 作者: Park, Ha H.;Choi, Alexander A.;Xu, Ke
• 通讯作者: Xu, Ke