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Construction of gene-databank based on the analysis of genetic variation of populations of Quercus see. Prinus in Japan.

Construction of gene-databank based on the analysis of genetic variation of populations of Quercus see. Prinus in Japan.
基于栎属种群遗传变异分析的基因数据库构建
批准号:
13460069
负责人:
HARADA Ko
金额:
$8.58万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (B)
财政年份:
2001
资助国家:
日本
项目状态:
已结题
起止时间:
2001 至 2003

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中文摘要
翻译
阔叶落叶林是日本重要的遗传资源。本研究旨在阐明栎属(Quercus, pius)四种日本栎的遗传结构,它们是上述森林的重要组成部分。将DMA材料和本研究获得的数据整合到基因数据库中,为遗传信息的利用服务。本研究在日本和中国、韩国和俄罗斯的部分地区采集了蒙古栎550份、锯齿栎80份、美洲栎40份和齿齿栎35份。我们还采集了油fagus crenata样品488份。我们测定了栎树叶绿体DNA的5000 bp区域的序列,并在栎树种中发现了11个单倍型。所有的物种在相同的位置具有共同的单倍型,表明物种之间发生了遗传渐渗。这些单倍型主要分布在日本东北部和西南部。在国外样品中发现的单倍型表明,在过去的冰期,东北的人通过库页岛迁移,西南的人通过朝鲜半岛迁移。这一发现表明这两组人经历了不同的适应过程。为了证实这一点,我们从具有代表性的单倍型中克隆了蛋氨酸合成酶基因,发现了两个分化程度较高的基因α和β。我们测试了这些基因的中性,并发现了一些证据,表明不同类型的自然选择对这些基因的作用取决于基因被发现的位置。
英文摘要
Broad leaf deciduous forest is important genetic resources in Japan. This study aimed at clarifying the genetic structure of four Japanese oak species belonging to the genus Quercus, subsection Prinus which are important componets of above mentioned forest. DMA materials and the data obtained in this study were integrated into a gene-data-bank to serve for utilizing genetic information.In this study we collected 550 Q. mongolica, 80 Q. serrata, 40 Q. aliena and 35 Q. dentata samples from all over Japan and some places in China, Korea, and Russia. We also collected 488 samples of Fagus crenata. We determined sequences of a total of 5,000 bp regions of chloroplast DNA and found 11 haplotypes in the Quercus species. All the species possessed common haplotypes at the same locations, suggesting introgression had occurred among the species. These haplotypes were devided into two main groups in the northeast and the southwest part of Japan. Haplotypes found in the foreign samples indicated that those in northeast migrated via Sakhalin and those in southwest migrated via the Korean Peninsula during the past glacial ages. This finding suggests that these two groups experienced different adaptive process. In order lo confirm this, we cloned methionine synthase gene from the representative haplolypes and found two largely differentiated genes, α and β. We tested neutrality of these genes and found some evidence that different type of natural selection had operated on these genes depend on the location where genes arc found.
期刊论文(32)
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通讯作者:
岡浦貴富, 原田光, 生方正俊: "日本列島およびその周辺域のコナラ節4樹種の葉緑体DNAにもとづく遺伝的構造"第114回日本林学会大会学術講演集. 363 (2003)
Takatomi Okaura、Hikaru Harada 和 Masatoshi Ikukata:“基于日本群岛及周边地区四种栎属物种叶绿体 DNA 的遗传结构”日本林业学会第 114 届年会记录 363 (2003)。
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Kamiya, K., Harada, Clyde, M.M., Latiff, A.M.: "Genetic variation of Trigonobalanus verticillata, a primitive species of fagaceae, in Malaysia revealed by chloroplast sequences and AFLP markers."Genes and Genetic Systems. 77. 177-186 (2002)
Kamiya, K.、Harada、Clyde, M.M.、Latiff, A.M.:“通过叶绿体序列和 AFLP 标记揭示了马来西亚山毛榉科原始物种 Trigonobalanus verticillata 的遗传变异。”基因和遗传系统。
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Okaura, T., Harada, K., Ubukata, M.: "Genetic structure of Japanese oaks revealed by chloroplast DNA variation"In : Proc.Int.Nat.Workshop BIO-RIFOR.Seoul, Korea. Oct.8-12. 94-98 (2002)
Okaura, T.、Harada, K.、Ubukata, M.:“通过叶绿体 DNA 变异揭示日本橡树的遗传结构”,见:Proc.Int.Nat.Workshop BIO-RIFOR.首尔,韩国。
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14
    Comprehensive search of adaptive genes relating to phenology in the Japanese oak
    • 批准号:
      22380086
    • 项目类别:
      Grant-in-Aid for Scientific Research (B)
    • 资助金额:
      $12.06万
    • 财政年份:
      2010
    • 负责人:
      HARADA Ko
    • 依托单位:
    Search for adaptive changes in genes affecting phenology of the Japanese oak
    • 批准号:
      19380089
    • 项目类别:
      Grant-in-Aid for Scientific Research (B)
    • 资助金额:
      $12.65万
    • 财政年份:
      2007
    • 负责人:
      HARADA Ko
    • 依托单位:
    Molecular population genetic study of the regulatory systems of the heat shock genes
    • 批准号:
      06640799
    • 项目类别:
      Grant-in-Aid for General Scientific Research (C)
    • 资助金额:
      $1.41万
    • 财政年份:
      1994
    • 负责人:
      HARADA Ko
    • 依托单位:
    A STUDY OF IDENTIFICATION AND QUANTIFICATION OF MIDDLE REPETITIVE SEQUENCES OF DROSOPHILA GENOME
    • 批准号:
      03640540
    • 项目类别:
      Grant-in-Aid for General Scientific Research (C)
    • 资助金额:
      $1.22万
    • 财政年份:
      1991
    • 负责人:
      HARADA Ko
    • 依托单位:
    海外基金