Mechanistic insights into C-H bond activation in mononuclear non-heme iron enzymes from a combination of experiment and quantum chemistry

结合实验和量子化学对单核非血红素铁酶中 C-H 键激活的机制见解

• 批准号: 49804235
• 负责人: Professor Dr. Frank Neese
• 金额: --
• 依托单位: Max-Planck-Institut für Kohlenforschung
• 依托单位国家: 德国
• 项目类别: Research Grants
• 财政年份: 2007
• 资助国家: 德国
• 起止时间: 2006-12-31 至 2010-12-31
• 项目状态: 已结题
• 来源: https://gepris.dfg.de/gepris/projekt/49804235?language=en
• 关键词: Mechanistic; insights; into; bond; activation

Metalloenzymes play vital role in metabolism, in particular, they are capable to oxidize unactivated aliphatic C-H bonds of hydrocarbons employing the “green” oxidant dioxygen.[1,2] Understanding the catalytic mechanisms of metalloenzyme reactions at the atomic level will enhance our knowledge for further design and synthesis of novel low-molecular weight “green” catalysts. Quantum chemical approaches provide key contributions to this important field of investigation: (1) Calculation of the spectroscopic parameters of potential reaction intermediates and comparison with experimentally determined properties is vital for the structural elucidation of short lived species that are inaccessible to X-ray crystallography; (2) Optimization of the structures of transition states in order to “connect” these intermediates and to predict reaction rates and kinetic isotope effects; (3) Qualitative analysis of the electronic structures of these intermediates and transition states provides deep chemical insight into the catalytic mechanisms, (4) The combined analysis triggers new ideas for conclusive experiments that probe the intricate details of the catalytic mechanisms. This proposal is aimed at the elucidation of the catalytic mechanisms of Taurine:α- Ketoglutarate Dioxygenase (TauD), α-KG-dependent oxygenase/halogenase (SyrB2), and Isopenicillin N sythase (IPNS). All of these enzymes feature mononuclear nonheme iron centers, and were investigated in detail experimentally by our american project partners. In addition to the fruitful interaction with the experimentally oriented project partners we plan to engage in a theoretical collaboration with the Hammes- Schiffer group that is specialized in hydrogen atom transfer reactions in large molecules. This synergetic approach will enable us to understand the relationship between the electronic and geometric structure of these enzymes and their enzymatic activity in sub-atomic detail. Tasks to be completed include: 1. Calculation of spectroscopic parameters of their intermediates, verification of the results by comparison with experimental findings. 2. Location of transition states on the potential energy surfaces (PES), gaining detailed energetic information on the catalytic cycle. Particular emphasis will be laid on the important subject on spin-state energetics in relation to the concept of two-state reactivity. Analysis of electronic structure of these intermediates and transition states to understand the catalytic mechanism at the atomic level.

金属酶在代谢中起着至关重要的作用，特别是它们能够利用“绿色”氧化剂二氧氧化碳氢化合物的非活化脂肪族C-H键[1,2]。在原子水平上理解金属酶反应的催化机制将有助于我们进一步设计和合成新型低分子量“绿色”催化剂。量子化学方法为这一重要的研究领域提供了关键的贡献：(1)计算潜在反应中间体的光谱参数并与实验确定的性质进行比较对于阐明x射线晶体学无法获得的短寿命物质的结构至关重要；(2)优化过渡态结构，以“连接”这些中间体，并预测反应速率和动力学同位素效应；(3)对这些中间体和过渡态的电子结构进行定性分析，为深入了解催化机理提供了深入的化学见解；(4)综合分析为结论性实验提供了新的思路，从而探索催化机理的复杂细节。本研究旨在阐明牛磺酸：α-酮戊二酸双加氧酶（TauD）、α- kg依赖性加氧酶/卤化酶（syb2）和异霉素N合成酶（IPNS）的催化机制。所有这些酶都具有单核非血红素铁中心，并由我们的美国项目伙伴进行了详细的实验研究。除了与实验导向的项目合作伙伴进行富有成效的互动外，我们还计划与Hammes- Schiffer小组进行理论合作，该小组专门研究大分子中的氢原子转移反应。这种协同的方法将使我们能够在亚原子细节上理解这些酶的电子和几何结构与其酶活性之间的关系。需要完成的任务包括：1。计算了中间体的光谱参数，并与实验结果进行了对比验证。2. 势能面（PES）上过渡态的位置，获得催化循环的详细能量信息。我们将特别强调与双态反应性概念有关的自旋态能量学这一重要课题。分析这些中间体和过渡态的电子结构，在原子水平上了解催化机理。