NMR ANALYSIS OF STRUCTURAL CHARACTERISTICS OF CATALYTIC ANTIBODIES AND IMPROVEMENT OF THEIR CATALYTIC ACTIVITIES
NMR ANALYSIS OF STRUCTURAL CHARACTERISTICS OF CATALYTIC ANTIBODIES AND IMPROVEMENT OF THEIR CATALYTIC ACTIVITIES
批准号:
10672018
负责人:
TAKAHASHI Hideo
金额:
$2.05万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
1998
资助国家:
日本
项目状态:
已结题
起止时间:
1998 至 1999
中文摘要
In the present study we performed a structural study for two catalytic antibodies,6D9and9C10,which catalyze the hydrolysis of a non-bioactive chloramphenicol monoester derivative(Substrate)to generate chloramphenicol。Although there is a high similarity in primary structures of these antibodies,6D9 possesses the higher activity(k i D2 cat文件D2/k ii D2 uncat文件D2=895)than9C10does(k I D2/k ii D2 uncat文件D2=56)。On the basis of the enzymatic study,the difference in the binding constant of the antibodies for transition state analogue(TSA)and Substrate is responsible for the expression of the catalytic activities。Therefore we decided to investigate how the catalytic antibodies discriminate TSA from Substrate at the atomic level using NMR。From the result of our NMR analyses,we conclude the followings,1.Imidazole proton of His27d(L)of 6D9forms a hydrogen bond to the oxygen atom of phosphonate group of TSA,while the hydrogen bond is not found in the 6D9-Substrate,9CIO-Sub…More strate and 9CIO-TSA complexes。His27d(L)of 6D9plays an important role for discriminating the difference of chemical structure between TSA and Substrate.2。Unusual broadening observed for aromatic proton resonances of TSA and Substrate in the bound state revealed that a flip-flop motion of 4-((Trifluoroacetyl)amino)phenyl ring is restricted in the 9C10-Substrate and 9C10-TSA complexes.The same phenomenon is noted in both of the two aromatic rings of TSA in the 6D9-TSA complex,indicating that a strong interaction exists between the amino acid residues and both of the two aromatic rings in6D9-TSA complex。Considering that relative positions of the two aromatic rings in the binding site is different between TSA and Substrate since the atomic orbitals of carbonyl carbon in Substrate and phosphorus in TSA are sp I D12文件D1,respectively,we conclude that6D9could recognize the structural difference between TSA and Substrate in the bound state through the interaction and then 6D9gain the high alytic activities,Next winding site is different between between and Substrate in the bound state through the interaction and then6D9gain the hcatalytic activities。In this study we have investigated the microenvironment of the reaction center,carbonyl carbon of Substrate which is bound to7C8,and determined the pH profile of the7C8catalyzed reaction rate。These results indicate that the residue of which pKa is approximately 4.5 affects the catalytic mechanism of 7C8。The pH titration study of 7C8labeled with I D115锡D1N revealed that the functional residue is His92(L)。It is concluded that His92(L)as well as Tyr95(H)play a significant role in catalytic reaction by 7C8。Investigation of catalytic mechanism by these residues is now in progress.Less:Less
英文摘要
In the present study we performed a structural study for two catalytic antibodies, 6D9 and 9C10, which catalyze the hydrolysis of a non-bioactive chloramphenicol monoester derivative (Substrate) to generate chloramphenicol. Although there is a high similarity in primary structures of these antibodies, 6D9 possesses the higher activity (kィイD2catィエD2/kィイD2uncatィエD2 = 895) than 9C10 does (kィイD2catィエD2/kィイD2uncatィエD2 = 56). On the basis of the enzymatic study, the difference in the binding constant of the antibodies for transition state analogue (TSA) and Substrate is responsible for the expression of the catalytic activities. Therefore we decided to investigate how the catalytic antibodies discriminate TSA from Substrate at the atomic level using NMR. From the result of our NMR analyses, we conclude the followings,1. Imidazole proton of His27d(L) of 6D9 forms a hydrogen bond to the oxygen atom of phosphonate group of TSA, while the hydrogen bond is not found in the 6D9-Substrate, 9CIO-Sub … More strate and 9CIO-TSA complexes. His27d(L) of 6D9 plays an important role for discriminating the difference of chemical structure between TSA and Substrate.2. Unusual broadening observed for aromatic proton resonances of TSA and Substrate in the bound state revealed that a flip-flop motion of 4-((trifluoroacetyl)amino)phenyl ring is restricted in the 9C10-Substrate and 9C10-TSA complexes. The same phenomenon is noted in both of the two aromatic rings of TSA in the 6D9-TSA complex, indicating that a strong interaction exists between the amino acid residues and both of the two aromatic rings in 6D9-TSA complex. Considering that relative positions of the two aromatic rings in the binding site is different between TSA and Substrate since the atomic orbitals of carbonyl carbon in Substrate and phosphorus in TSA are spィイD12ィエD1 and spィイD13ィエD1, respectively, we conclude that 6D9 could recognize the structural difference between TSA and Substrate in the bound state through the interaction and then 6D9 gain the high catalytic activities.Next, we performed a structural study of catalytic antibody 7C8. In this study we have investigated the microenvironment of the reaction center, carbonyl carbon of Substrate which is bound to 7C8, and determined the pH profile of the 7C8 catalyzed reaction rate. These results indicate that the residue of which pKa is approximately 4.5 affects the catalytic mechanism of 7C8. The pH titration study of 7C8 labeled with ィイD115ィエD1N revealed that the functional residue is His92(L). It is concluded that His92(L) as well as Tyr95(H) play a significant role in catalytic reaction by 7C8. Investigation of catalytic mechanism by these residues is now in progress. Less
期刊论文(21)
专著(0)
科研奖励(0)
会议论文
登录
查看更多内容
Takahashi, H., Kim, J. I., Min, H. J., Sato, K., Swartz, K. J. and Shimada, I.: "Solution structure of hanatoxin 1, a gating modifier of voltage-dependent K+ channels : common surface features of gating modifier toxins."J. Mol. Biol.. (in press).
Takahashi, H.、Kim, J. I.、Min, H. J.、Sato, K.、Swartz, K. J. 和 Shimada, I.:“花毒素 1 的溶液结构,电压依赖性 K 通道的门控修饰剂:门控修饰剂的常见表面特征
DOI:
--
发表时间:
期刊:
影响因子:
--
作者:
[]
通讯作者:
K. Takeuchi: "Three-dimensional solution structure of calcium channel activator: Imperatoxin A determined by NMR spectroscopy"Peptide Science 1999. 307-310 (1999)
K. Takeuchi:“钙通道激活剂的三维溶液结构:通过NMR波谱测定的欧前胡毒素A”Peptide Science 1999. 307-310 (1999)
DOI:
--
发表时间:
期刊:
影响因子:
--
作者:
[]
通讯作者:
DOI:
--
发表时间:
期刊:
影响因子:
--
作者:
[]
通讯作者:
H.Takahashi: "A novel NMR method for the determination of the interface of large protein-protein complexes"Nat.Struct.Biol.. 7. 220-223 (2000)
H.Takahashi:“一种测定大蛋白质-蛋白质复合物界面的新型 NMR 方法”Nat.Struct.Biol.. 7. 220-223 (2000)
DOI:
--
发表时间:
期刊:
影响因子:
--
作者:
[]
通讯作者:
M. Nakasako: "The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody"J. Mol. Biol.. 291. 117-134 (1999)
M. Nakasako:“抗丹磺酰单克隆抗体 Fv 片段晶体结构中互补决定区 H3 的 pH 依赖性结构变化”J.
DOI:
--
发表时间:
期刊:
影响因子:
--
作者:
[]
通讯作者:
共 19 条
Basic study of the niche function improvement medicine development that targeted a homeodynamics-related mediator
-
批准号:18K06905
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.75万
-
财政年份:2018
-
负责人:TAKAHASHI Hideo
-
依托单位:
Research for homeodynamics regeneration-promoting drug discovery
-
批准号:15K08253
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$3.16万
-
财政年份:2015
-
负责人:TAKAHASHI Hideo
-
依托单位:
Basic scientific research for formulating drugs for treatment of hypertension
-
批准号:24590337
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$3.49万
-
财政年份:2012
-
负责人:TAKAHASHI Hideo
-
依托单位:
Fundamental research for NMR structural analysis of human membrane proteins
-
批准号:24370048
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$11.4万
-
财政年份:2012
-
负责人:TAKAHASHI Hideo
-
依托单位:
Impact evaluation of Tokyo Metropolitan area on the occurrence of torrential rainfall in the Kanto district by using high density rain-gauge network
-
批准号:20500897
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.91万
-
财政年份:2008
-
负责人:TAKAHASHI Hideo
-
依托单位:
A novel anti-HMGB1 Ab therapy for treatment of B-cell lymphoma
-
批准号:20590539
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$3.0万
-
财政年份:2008
-
负责人:TAKAHASHI Hideo
-
依托单位:
Development of a CALL System for Cultural Understanding
-
批准号:19320080
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$12.56万
-
财政年份:2007
-
负责人:TAKAHASHI Hideo
-
依托单位:
The Effects of HMGB1 on Ischemia-Reperfusion Injury in the Rat Heart.
-
批准号:18590509
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.57万
-
财政年份:2006
-
负责人:TAKAHASHI Hideo
-
依托单位:
Development of Remedial CALL Materials for Improving English Listening Skills of Japanese College Freshmen
-
批准号:16320071
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$9.41万
-
财政年份:2004
-
负责人:TAKAHASHI Hideo
-
依托单位:
Geographical research on the relationship between the occurrence of short-duration heavy rainfall and the spatial structure of surface property in the Tokyo metropolitan area
-
批准号:16500644
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.43万
-
财政年份:2004
-
负责人:TAKAHASHI Hideo
-
依托单位:
Safety management for Post-graduate clinical training
-
批准号:16390149
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$6.66万
-
财政年份:2004
-
负责人:TAKAHASHI Hideo
-
依托单位:
Inducible histamine protects mice from P.acnes-primed and LPS-induced hepatitis through H2-receptor stimulation
-
批准号:15590467
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.3万
-
财政年份:2003
-
负责人:TAKAHASHI Hideo
-
依托单位:
Biomechanics of human pelvis in 3D perspective
-
批准号:15570197
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$1.02万
-
财政年份:2003
-
负责人:TAKAHASHI Hideo
-
依托单位:
Formation and maintenance of the Mei-yu front disturbance over China
-
批准号:13680101
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$1.98万
-
财政年份:2001
-
负责人:TAKAHASHI Hideo
-
依托单位:
Joint Research on Differentiation and Growth specificity of Plant Cells
-
批准号:11694196
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$6.34万
-
财政年份:1999
-
负责人:TAKAHASHI Hideo
-
依托单位:
Studies of biological function and relationship between structure and function of major-type sigma factors
-
批准号:09460046
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$7.81万
-
财政年份:1997
-
负责人:TAKAHASHI Hideo
-
依托单位:
3D modeling and structural analysis of the cranium.
-
批准号:09640837
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$1.02万
-
财政年份:1997
-
负责人:TAKAHASHI Hideo
-
依托单位:
Study on the diversity in the structure of the Meiyu front and the distribution of rainfall and cloud
-
批准号:09680172
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$1.6万
-
财政年份:1997
-
负责人:TAKAHASHI Hideo
-
依托单位:
Elucidation of the structural mechanisms of the affinity maturation in the immune response of anti-NP antibodies.
-
批准号:07407062
-
项目类别:Grant-in-Aid for Scientific Research (A)
-
资助金额:$25.34万
-
财政年份:1995
-
负责人:TAKAHASHI Hideo
-
依托单位:
Studies of the productivity and maintenance of cell functions in the stationary-phase cells of bacteria
-
批准号:07556089
-
项目类别:Grant-in-Aid for Scientific Research (A)
-
资助金额:$1.6万
-
财政年份:1995
-
负责人:TAKAHASHI Hideo
-
依托单位:
国内基金
海外基金
登录
查看更多内容
适用膜蛋白-配体复合物结构测定的1H和19F距离约束检测的固体NMR方法研究
-
批准号:JCZRYB202500181
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2025
-
负责人:
-
依托单位:
NMR-CRISPR体系的构建及在肝癌ctDNA及miRNA联合检测中的应
用
-
批准号:
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2024
-
负责人:冯春凤
-
依托单位:
基于 NMR 指纹特征图谱与代谢组学结合模式追踪土家药
血筒果实中抗类风湿关节炎的效应物质
-
批准号:2024JJ6347
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2024
-
负责人:苏维
-
依托单位:
基于ResNet-CNN和2D1H.13C HSQC NMR技术的多基原藏药'阿布卡'品质整合评控体系构建
-
批准号:--
-
项目类别:青年科学基金项目
-
资助金额:--
-
批准年份:2024
-
负责人:杜欢
-
依托单位:
基于微流控-μNMR平台的一滴血检测技术在糖尿病免疫表型分析中的应用研究
-
批准号:
-
项目类别:省市级项目
-
资助金额:15.0万元
-
批准年份:2024
-
负责人:PENG WENG KUNG
-
依托单位:
NMR研究乳酸化TGIF1调控TGF-β/Smad信号转导通路的分子机制
-
批准号:22374155
-
项目类别:面上项目
-
资助金额:50万元
-
批准年份:2023
-
负责人:胡锐
-
依托单位:
基于In-cell NMR策略对“舟楫之剂”桔梗中引经药效物质的快速发现研究
-
批准号:82305053
-
项目类别:青年科学基金项目
-
资助金额:30万元
-
批准年份:2023
-
负责人:王丽明
-
依托单位:
基于“Geo-marker新概念—HPLC-MS-SPE-NMR联用技术—RONUS-HSQC新方法”研究中药道地性的物质基础——以川芎为例
-
批准号:82374152
-
项目类别:面上项目
-
资助金额:48万元
-
批准年份:2023
-
负责人:熊亮
-
依托单位:
锌基复合金属氧化物催化CO2加氢反应的固体NMR谱学研究
-
批准号:22372160
-
项目类别:面上项目
-
资助金额:50万元
-
批准年份:2023
-
负责人:高攀
-
依托单位:
超极化增强的固体NMR方法及在分子筛催化不饱和醛选择性加氢反应中的应用研究
-
批准号:22372179
-
项目类别:面上项目
-
资助金额:50万元
-
批准年份:2023
-
负责人:王伟宇
-
依托单位: