Theoretical Study of Chemical Reactions in solution and Higher Order Nonlinear Spectroscopies
溶液中化学反应和高阶非线性光谱的理论研究
基本信息
- 批准号:11640503
- 负责人:
- 金额:$ 2.24万
- 依托单位:
- 依托单位国家:日本
- 项目类别:Grant-in-Aid for Scientific Research (C)
- 财政年份:1999
- 资助国家:日本
- 起止时间:1999 至 2000
- 项目状态:已结题
- 来源:
- 关键词:
项目摘要
In this research project, I have been investigating proton transfer in ice, higher order nonlinear spectroscopies of liquids, and freezing mechanism of liquid water.1. Fast Proton Transfer (PT) in IceWe have analyzed potential energy surface and reaction coordinate along PT in ice by using a QM/MM method. In ice, one of four interactions between H_3O^+ and surrounding molecules is repulsive and a large structure change such as a shrinkage of distance between oxygen atoms cannot take place. These two crucial elements result in a small energy barrier along PT in ice. Therefore, PT in ice is fast, though the detailed mechanism of PT in ice is quite different from that in liquid.2. Higher Order Nonlinear Spectroscopies of LiquidsWe have analyzed one- and two-dimensional infrared spectroscopies of HDO in heavy by using 'generalized Quantum Master equation'. In the method, solvent fluctuations are properly considered in the dynamics of the density matrix of the vibrational states of a HDO molecule. Thus, it is possible to analyze any kinds of vibrational relaxation and vibrational spectroscopies in condensed phases. Two-dimensional Raman signal of liquid CS_3 is also investigated based on molecular dynamics simulation.3. Liquid-Solid Phase Transition of Molecular LiquidsWe have analyzed the liquid-solid phase transitions of a stockmayer fluid and liquid water by using a constant temperature and constant pressure molecular dynamics. Multicanonical monte carlo and replica exchange methods are also employed in the calculation of water.
在本研究计画中,我一直在研究质子在冰中的传递、液体的高阶非线性光谱、液态水的冻结机制。本文用QM/MM方法分析了冰中质子快速转移(PT)的势能面和反应坐标沿着PT。在冰中,H_3O^+与周围分子的四种相互作用中有一种是排斥作用,因此不能发生大的结构变化,如氧原子之间的距离缩小。这两个关键因素导致在冰中沿沿着PT的小能量势垒。因此,冰中PT是快速的,尽管PT在冰中的详细机理与在液体中有很大的不同.液体的高阶非线性光谱我们用“广义量子主方程”分析了重质HDO的一维和二维红外光谱。在该方法中,溶剂的波动被适当地考虑在HDO分子的振动态的密度矩阵的动力学。因此,可以分析凝聚相中的任何类型的振动弛豫和振动光谱。基于分子动力学模拟,研究了液态CS_3的二维拉曼信号.分子液体的液-固相变我们用恒温恒压分子动力学方法分析了Stockmayer流体和液态水的液-固相变。在水的计算中也采用了多正则蒙特卡罗和副本交换方法。
项目成果
期刊论文数量(16)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
I.Ohmine and S.Saito: "Water Dynamics ; Fluctuation, Relaxation, and Chemical Reactions in Hydrogen Bond Network Rearrangement"Acc.Chem.Res.. 32-9. 741-749 (1999)
I.Ohmine 和 S.Saito:“水动力学;氢键网络重排中的波动、松弛和化学反应”Acc.Chem.Res. 32-9。
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S.Saito, M.Matsumoto, and I.Ohmine: "Water Dynamics ; Fluctuation, Relaxation, and Chemical Reaction"Adv.Class.Trajec.Methods. 4. 105-151 (1999)
S.Saito、M.Matsumoto 和 I.Ohmine:“水动力学;波动、松弛和化学反应”Adv.Class.Trajec.Methods。
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S.Saito: "Water Dynamics ; Fluctuation, Relaxation, and Chemical Reaction"Adv.Class. Trajec. Methods. 4. 105-151 (1999)
S.Saito:“水动力学;波动、松弛和化学反应”高级班。
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I.Ohmine: "Water Dynamics ; Fluctuation, Relaxation, and Chemical Reaction in Hydrogen Bond Network Rearrangement"Acc.Chem.Res.. 32・9. 741-749 (1999)
I.Ohmine:“水动力学;氢键网络重排中的波动、弛豫和化学反应”Acc.Chem.Res. 32・9(1999)。
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斉藤真司: "水のダイナミクスとクラスター"Bulletin of Cluster Science and Technology. 2. 25-32 (1999)
Shinji Saito:“水动力学和集群”集群科学技术通报。2. 25-32 (1999)。
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SAITO Shinji其他文献
Hybrid Monte Carlo method with potential scaling for sampling from the canonical multimodal distribution and imitating the relaxation process
具有潜在缩放功能的混合蒙特卡罗方法,用于从规范多模态分布中采样并模拟松弛过程
- DOI:
10.1063/5.0082378 - 发表时间:
2022 - 期刊:
- 影响因子:0
- 作者:
INAGAKI Taichi;SAITO Shinji - 通讯作者:
SAITO Shinji
Microscopic insights into dynamic disorder in the isomerization dynamics of the protein BPTI
蛋白质 BPTI 异构化动力学动态紊乱的微观观察
- DOI:
10.1063/5.0055152 - 发表时间:
2021 - 期刊:
- 影响因子:0
- 作者:
MATSUMURA Yoshihiro;SAITO Shinji - 通讯作者:
SAITO Shinji
Sharp Switching Printed TFTs based on Highly Layered-Crystalline Organic Semiconductors
基于多层晶体有机半导体的夏普开关印刷 TFT
- DOI:
- 发表时间:
2021 - 期刊:
- 影响因子:0
- 作者:
INAGAKI Taichi;SAITO Shinji;Tatsuo Hasegawa - 通讯作者:
Tatsuo Hasegawa
Excitation energy transfer in the Fenna-Matthews-Olson protein optimized by site-dependent fluctuations
通过位点依赖性波动优化 Fenna-Matthews-Olson 蛋白中的激发能量转移
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- 发表时间:
2021 - 期刊:
- 影响因子:0
- 作者:
沖本洋一;板谷 治郎;堀内 佐智雄;Toshihiko Yokoyama;岩井智弘,三浦佳子,澤村正也;SAITO Shinji - 通讯作者:
SAITO Shinji
Tautomeric Effect of Histidine on β-Sheet Formation of Amyloid Beta 1?40: 2D-IR Simulations
组氨酸对淀粉样蛋白 Beta 1?40 的 β 片层形成的互变效应:2D-IR 模拟
- DOI:
10.1016/j.bpj.2020.07.009 - 发表时间:
2020 - 期刊:
- 影响因子:3.4
- 作者:
NAM Yeonsig;KALATHINGAL Mahroof;SAITO Shinji;LEE Jin Yong - 通讯作者:
LEE Jin Yong
SAITO Shinji的其他文献
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{{ truncateString('SAITO Shinji', 18)}}的其他基金
Theoretical studies of conformation transition dynamics and functions of biomolecules
生物分子构象转变动力学和功能的理论研究
- 批准号:
25288011 - 财政年份:2013
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research (B)
Study for High-speed comuting for plasma particle-in-cell simulation by using GPU
GPU高速计算等离子体胞内粒子模拟研究
- 批准号:
24654127 - 财政年份:2012
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Challenging Exploratory Research
Development of analytical method for structural change dynamics of biomolecules and its application
生物分子结构变化动力学分析方法的发展及其应用
- 批准号:
23655020 - 财政年份:2011
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Challenging Exploratory Research
Elucidation of relaxation and reaction dynamics using simulations of linear and nonlinear spectroscopy
使用线性和非线性光谱模拟阐明弛豫和反应动力学
- 批准号:
22350013 - 财政年份:2010
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research (B)
Nonlinear development of whistler turbulence and energy transfer mechanism to plasma particles
哨声湍流的非线性发展和等离子体粒子的能量传递机制
- 批准号:
21740353 - 财政年份:2009
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Young Scientists (B)
Theoretical Study on Spatial and Temporal Heterogeneous Dynamics in Condensed Phases
凝聚相时空非均质动力学理论研究
- 批准号:
18066018 - 财政年份:2006
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research on Priority Areas
Theoretical study of chemical reaction and phase transition dynamics by using multi-dimensional spectroscopy
利用多维光谱理论研究化学反应和相变动力学
- 批准号:
16350008 - 财政年份:2004
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research (B)
Theoretical Study on fluctuations in condensed phases and nonlinear spectroscopies
凝聚相涨落与非线性光谱的理论研究
- 批准号:
13640506 - 财政年份:2001
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research (C)
Elucidation of signaling molecules involved in macrophage activation by bacterial lipopolysaccharide
阐明细菌脂多糖参与巨噬细胞激活的信号分子
- 批准号:
13670281 - 财政年份:2001
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research (C)
The Study of Survival Strategy of Hunter-Herders in Siberia
西伯利亚猎牧民生存策略研究
- 批准号:
09041028 - 财政年份:1997
- 资助金额:
$ 2.24万 - 项目类别:
Grant-in-Aid for Scientific Research (A).














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