Development of generation of large-male potential energy surfaces num local interpolation and molecular mechanics
Development of generation of large-male potential energy surfaces num local interpolation and molecular mechanics
批准号:
16550025
负责人:
ISHIDA Toshimasa
金额:
$2.16万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2004
资助国家:
日本
项目状态:
已结题
起止时间:
2004 至 2007
中文摘要
点击翻译按钮获取中文摘要
英文摘要
In large scale systems, so called QM/MM methods have been employed in the quantum chemistry society and tens of trajectories (even only one trajectory) sometimes have been employed to extract the picture of reaction mechanism. However, it is still difficult for us to obtain the number of trajectories which is statistically significant because potential energy calculations are time consuming. The statistically significant result may be drastically different from the picture that was obtained from tens of trajectory calculations. Thus, it is desirable to construct a method to evaluate potential energy surface fast. We attempted to combine a local interpolation scheme, IMLS/Shepard scheme, and molecular mechanics, but the attempt is still under way.Thus, we have undertaken a direct dynamics for a biomolecule, retinal, instead. We described the dynamics of retinal using Zhu-Nakamura formula for non-adiabatic transitions from the first (photo) exited state to the ground state. We treated all the degrees of freedom in our direct dynamics although we originally planned to describe small number of degrees of freedom icing IMLS/Shepard scheme and the other degrees of freedom using molecular mechanics. We have found that retinal (at least in gas phase) experiences two-step relaxation after the deexcitation through non-adiabatic transition.Also, we have applied our IMLS/Shepard scheme to the O+HCl system. Large scale trajectory calculations using three potential energy surfaces have been carried out to obtain reactive differential cross sections and the results are in agreement with experiment We have found that the dynamics is determined by that in the ground state although the two excited states are in a relatively low energy region.
期刊论文(239)
专著(0)
科研奖励(0)
会议论文
登录
查看更多内容
Theoretical study of the water-induced oxidation reaction on the bare Si surface H_2O+Si(100)-(2x1)
裸Si表面水致氧化反应H_2O Si(100)-(2x1)的理论研究
DOI:
--
发表时间:
2006
期刊:
Chem. Phys. Lett. 424
影响因子:
--
作者:
[Hidekazu Watanabe, Shinkoh Nanbu, Zhi-Hong Wang, Jun Maki, Tsuneo Urisu, Mutsumi Aoyagi, and Kenta Ooi]
通讯作者:
and Kenta Ooi
Theoretical transition probabilities for A^1II-X ΣE^+ system of AINC and A1CN isomers based on global potential energy surfaces
基于全局势能面的 AINC 和 A1CN 异构体 A^1II-X ΣE^+ 体系的理论跃迁概率
DOI:
--
发表时间:
2006
期刊:
J. Chem. Phys 124
影响因子:
--
作者:
[Ikuo, Tokue, Shinkoh, Nanbu]
通讯作者:
Nanbu
Theoretical transition probabilities for the A^2A_1-X^2B_1 system of H_2O^+ and D_2O^+ and related Franck-Condon factors based on global potential energy surfaces
H_2O^和D_2O^的A^2A_1-X^2B_1系统的理论转移概率以及基于全局势能面的相关Franck-Condon因子
DOI:
--
发表时间:
2005
期刊:
J. Theo. Comp. Chem. 4
影响因子:
--
作者:
[Ikuo Tokue, Katsuyoshi Yamasaki, Satoshi Minamino, and Shinkoh Nanbu]
通讯作者:
and Shinkoh Nanbu
Special issue: Quantum Chemistry Literature Database
特刊:量子化学文献数据库
DOI:
--
发表时间:
2004
期刊:
J. Mole. Struc. THEOCHEM 669
影响因子:
--
作者:
[H. Hosoya, et. al.]
通讯作者:
et. al.
Three Pairs of Doublet Bands Assigned to Scissors Modes of SiH_2 on Si(100)Surfaces Observed in Several H_2O-induced Oxidation systems
在几种H_2O诱导氧化体系中观察到Si(100)表面SiH_2剪刀模式的三对双峰带
DOI:
--
发表时间:
2004
期刊:
Phys. Rev. B 69
影响因子:
--
作者:
[Z.-H. Wang, T. Urisu, S. Nanbu, J. Maki, M. Aoyagi, H. Watanabe, and K. Ooi]
通讯作者:
and K. Ooi
共 158 条
Non-adiabatic reaction dynamics simulation of biomolecules responding to photons
-
批准号:20608003
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.75万
-
财政年份:2008
-
负责人:ISHIDA Toshimasa
-
依托单位:
Development of the inhibitor for tangle formation of tau protein : Basic research for prevention of Altzheimer disease
-
批准号:20590111
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$3.08万
-
财政年份:2008
-
负责人:ISHIDA Toshimasa
-
依托单位:
Elucidatiop of Tangle Formation Mechanism Based on 3D-structural Analysis of Tau Protein
-
批准号:13680752
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.18万
-
财政年份:2001
-
负责人:ISHIDA Toshimasa
-
依托单位:
Development and applications of an interpolation scheme of potential energy surfaces which can be combined with latest ab initio methodologies
-
批准号:12640492
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.18万
-
财政年份:2000
-
负责人:ISHIDA Toshimasa
-
依托单位:
Molecular design of cathepsin L-specific inhibitor based on the teritiary structure.
-
批准号:06453194
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$4.1万
-
财政年份:1994
-
负责人:ISHIDA Toshimasa
-
依托单位:
Expression of mRNA cap-binding protein and structure analysis of its cap recognition mechanism
-
批准号:02453146
-
项目类别:Grant-in-Aid for General Scientific Research (B)
-
资助金额:$3.07万
-
财政年份:1990
-
负责人:ISHIDA Toshimasa
-
依托单位:
Molecular Design of delta-Selective Morphine Dimer Based on Enkephalin Conformation
-
批准号:63571029
-
项目类别:Grant-in-Aid for General Scientific Research (C)
-
资助金额:$1.28万
-
财政年份:1988
-
负责人:ISHIDA Toshimasa
-
依托单位:
海外基金