课题基金 / 基金详情

Development of generation of large-male potential energy surfaces num local interpolation and molecular mechanics

Development of generation of large-male potential energy surfaces num local interpolation and molecular mechanics
大雄势能面num局部插值和分子力学生成的发展
批准号:
16550025
负责人:
ISHIDA Toshimasa
金额:
$2.16万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2004
资助国家:
日本
项目状态:
已结题
起止时间:
2004 至 2007

项目摘要

项目成果

ISHIDA Toshimasa的其他基金

相似基金

相关文献

中文摘要
翻译
点击翻译按钮获取中文摘要
英文摘要
In large scale systems, so called QM/MM methods have been employed in the quantum chemistry society and tens of trajectories (even only one trajectory) sometimes have been employed to extract the picture of reaction mechanism. However, it is still difficult for us to obtain the number of trajectories which is statistically significant because potential energy calculations are time consuming. The statistically significant result may be drastically different from the picture that was obtained from tens of trajectory calculations. Thus, it is desirable to construct a method to evaluate potential energy surface fast. We attempted to combine a local interpolation scheme, IMLS/Shepard scheme, and molecular mechanics, but the attempt is still under way.Thus, we have undertaken a direct dynamics for a biomolecule, retinal, instead. We described the dynamics of retinal using Zhu-Nakamura formula for non-adiabatic transitions from the first (photo) exited state to the ground state. We treated all the degrees of freedom in our direct dynamics although we originally planned to describe small number of degrees of freedom icing IMLS/Shepard scheme and the other degrees of freedom using molecular mechanics. We have found that retinal (at least in gas phase) experiences two-step relaxation after the deexcitation through non-adiabatic transition.Also, we have applied our IMLS/Shepard scheme to the O+HCl system. Large scale trajectory calculations using three potential energy surfaces have been carried out to obtain reactive differential cross sections and the results are in agreement with experiment We have found that the dynamics is determined by that in the ground state although the two excited states are in a relatively low energy region.
期刊论文(239)
专著(0)
科研奖励(0)
会议论文
生体分子モデル系の非断熱遷移ab initio動力学
生物分子模型系统的非绝热转变从头算动力学
DOI: --
发表时间: 2007
期刊:
影响因子: --
作者: [Hidekazu, Watanabe, Munetaka, Iwamura, Shinkoh, Nanbu, Tahei, Tahara, 石田俊正・南部伸孝・中村宏樹]
通讯作者: 石田俊正・南部伸孝・中村宏樹
Phosphorescence and Persistent Chemiluminescence of Bisindolylmaleimide Derivatives
双吲哚马来酰亚胺衍生物的磷光和持久化学发光
DOI: --
发表时间: 2007
期刊:
影响因子: --
作者: [Manabu, Nakazono, Shinkoh, Nanbu, Ryoichi, Kuwano, Manabu, Kashiwabara, Kiyoshi, Zaitsu]
通讯作者: Zaitsu
Optimum reaction control by laser radiation employing the second-order chirping method
采用二阶啁啾方法的激光辐射的最佳反应控制
DOI: --
发表时间: 2007
期刊:
影响因子: --
作者: [Shinkoh, Nanbu, Toshimasa, Ishida]
通讯作者: Ishida
Bisindolylmaleimide誘導体の合成及び蛍光特性
双吲哚基马来酰亚胺衍生物的合成及荧光性质
DOI: --
发表时间: 2006
期刊:
影响因子: --
作者: [中園 学, 上崎啓裕, 南部伸孝, 財津 潔]
通讯作者: 財津 潔
158
    Non-adiabatic reaction dynamics simulation of biomolecules responding to photons
    • 批准号:
      20608003
    • 项目类别:
      Grant-in-Aid for Scientific Research (C)
    • 资助金额:
      $2.75万
    • 财政年份:
      2008
    • 负责人:
      ISHIDA Toshimasa
    • 依托单位:
    Development of the inhibitor for tangle formation of tau protein : Basic research for prevention of Altzheimer disease
    • 批准号:
      20590111
    • 项目类别:
      Grant-in-Aid for Scientific Research (C)
    • 资助金额:
      $3.08万
    • 财政年份:
      2008
    • 负责人:
      ISHIDA Toshimasa
    • 依托单位:
    Elucidatiop of Tangle Formation Mechanism Based on 3D-structural Analysis of Tau Protein
    • 批准号:
      13680752
    • 项目类别:
      Grant-in-Aid for Scientific Research (C)
    • 资助金额:
      $2.18万
    • 财政年份:
      2001
    • 负责人:
      ISHIDA Toshimasa
    • 依托单位:
    Development and applications of an interpolation scheme of potential energy surfaces which can be combined with latest ab initio methodologies
    海外基金