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Study for evolutionary genomics of adaptive radiation: an analysis of speciation in endemic species of Bonin Islands.

Study for evolutionary genomics of adaptive radiation: an analysis of speciation in endemic species of Bonin Islands.
适应性辐射的进化基因组学研究:小笠原群岛特有物种的物种形成分析。
批准号:
22370031
负责人:
ITO Motomi
金额:
$11.98万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (B)
财政年份:
2010
资助国家:
日本
项目状态:
已结题
起止时间:
2010 至 2012

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中文摘要
翻译
本研究利用基因组技术对具有适应性辐射的博宁群岛特有植物进行了分析。采用rna - seq方法,对林菖菖树进行鉴定。grandicollum, C。用新一代测序仪对keiskeanum和Paraixeris denticulate进行分析。通过对两种特有种麻麻(crepiddiastrum)、C. linguifolium和C.grandicollum表达水平差异显著的基因进行检测,发现1个基因为黄酮类化合物生物合成的候选基因。此外,我们还将其与近缘属的一年生草本细齿副姜(Paraixeris denticulate)进行了比较,以检测它们之间表达水平不同的基因。结果,我们检测到两个参与血管分化的基因。
英文摘要
In this study, endemic plant species of Bonin Islands with adaptive radiation t have been analysed using the genome technology.Using RNAseq method, Crepidiastrum linguifolium,C。 grandicollum, C。keiskeanum, and Paraixeris denticulate were analyzed with the next generationsequencer. As a result of detecting the genes with significantly differing expression levels between two endemic species of Crepidiastrum, C. linguifolium and C.grandicollum, we found one gene which were the candidate gene for flavonoid biosynthesis. Further, we compared with Paraixeris denticulate, an annual herb of closely related genus of Crepidiastrum, for detecting genes with different of expression level between them. As a result, we detected two genes involved in vascular differentiation.
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会议论文
A Novel Tool for Observation of Biodiversity
观察生物多样性的新工具
DOI: --
发表时间: 2012
期刊:
影响因子: --
作者: [Kato, T., Jinbo, U., Ito, M]
通讯作者: M
DOI: 10.3732/ajb.1000484
发表时间: 2011-11
期刊: American journal of botany
影响因子: 3
作者: [Joel H. Nitta;A. Ebihara;M. Ito]
通讯作者: Joel H. Nitta;A. Ebihara;M. Ito
DOI: 10.1242/dev.076091
发表时间: 2012-09-01
期刊: DEVELOPMENT
影响因子: 4.6
作者: [Aoyama, Tsuyoshi, Hiwatashi, Yuji, Hasebe, Mitsuyasu]
通讯作者: Hasebe, Mitsuyasu
DOI: 10.1371/journal.pone.0015136
发表时间: 2010-12-08
期刊: PloS one
影响因子: 3.7
作者: [Ebihara A, Nitta JH, Ito M]
通讯作者: Ito M
Evolutionary and phylogeographic studies of Fagus ecosystems
  • 批准号:
    25304013
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
  • 资助金额:
    $11.48万
  • 财政年份:
    2013
  • 负责人:
    ITO Motomi
  • 依托单位:
Adaptive Evolution of Plants to Ultra-basic Soil: Comparative Genomic Analysis in Aster savatieri
  • 批准号:
    25291085
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
  • 资助金额:
    $11.4万
  • 财政年份:
    2013
  • 负责人:
    ITO Motomi
  • 依托单位:
Evolutionary analysis of insect groups feeding the plant species group with disjunct distribution between East Asia and eastern North America
  • 批准号:
    22405012
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
  • 资助金额:
    $12.4万
  • 财政年份:
    2010
  • 负责人:
    ITO Motomi
  • 依托单位:
Study on symbiotic systems with Nothofugus species in southern hemisphere
  • 批准号:
    19405012
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
  • 资助金额:
    $9.82万
  • 财政年份:
    2007
  • 负责人:
    ITO Motomi
  • 依托单位:
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