Data Repository-Core

项目摘要 数据存储库核心是NMDR的重要基础。数据存储库的目标 核心是代谢组学工作台在下一代中的延续和实质性增强。 为实现这一目标，数据存储库核心人员将开展以下工作： ·制定其他研究捕获战略和方法，以协调下一代MW中的数据。 ·与SEPCC和政府协商设计元数据/数据标准和要求 冲浪板。 ·生成工具，通过多种机制对提交的数据进行管理，从自动到 手册。 ·为社区提供易于访问的机制，以评估下一代MW，即数据、工具、 以及MW上的接口。 ·将数据和计算基础设施过渡到下一代。当前的MW驻留在 圣地亚哥超级计算机中心云，我们将使下一代MW适应便携式混合云 环境。 ·扩大数据库，纳入来自新测量数据的新型数据和元数据。 ·创建易于使用的界面，以便于查询、分析和可视化。 ·根据SEPCC的建议，通过以下方式将公开可用的工具纳入下一代MW 开发可适应的应用程序编程接口(API)。 ·建立机制，帮助社区互操作并协调代谢组学数据与现有数据 数据资源。

Project Summary The Data Repository Core serves as the essential foundation of the NMDR. The objective of the data repository core is the continuation and substantial enhancement of the Metabolomics Workbench into the next generation. In order to achieve this, the data repository core personnel will carry out the following: • Develop additional strategies for study capture and methods to harmonize the data in the nextgen MW. • Design metadata/data standards and requirements in consultation with the SEPCC and Governing Board. • Generate tools for curation of submitted data through multiple mechanisms, ranging from automatic to manual. • Provide the community easily accessible mechanisms to evaluate the nextgen MW, i.e., the data, tools, and interfaces on the MW. • Transition the data and computational infrastructure into next generation. The current MW resides in the San Diego Supercomputer Center Cloud and we will adapt the nextgen MW to portable, hybrid cloud environments. • Expand the database to incorporate novel types of data and metadata from new measurements. • Create easy to use interfaces that will facilitate query, analysis, and visualization. • Incorporate publicly available tools, upon recommendations from SEPCC, into the nextgen MW through development of adaptable Application Programmer Interfaces (APIs). • Build mechanisms to help the community interoperate and harmonize metabolomics data with extant data resources.