Complexity, Cooperation and Community in Cancer
Complexity, Cooperation and Community in Cancer
批准号:
10392892
负责人:
Arthur D Lander
金额:
$187.91万
依托单位国家:
美国
项目类别:
财政年份:
2018
资助国家:
美国
项目状态:
已结题
起止时间:
2018-04-01 至 2024-03-31
关键词:
AddressAnimal ModelAreaBasic ScienceBehaviorBenignBiologyCaliforniaCancer BiologyCancer CenterCellsCharacteristicsChronic Myeloid LeukemiaColon CarcinomaColorectal CancerCommunitiesComplementComplexComprehensive Cancer CenterComputersCore FacilityData AnalysesDevelopmentDifferentiation and GrowthDiffusionEngineeringEnsureEnvironmentEventFacultyFamilyFeedbackFosteringGeneral PopulationGenomicsGrantGrowthHomeostasisHybridsImageIndividualJointsLearningLesionMainstreamingMalignant - descriptorMalignant NeoplasmsMathematicsMelanocytic nevusMethodologyModelingNational Institute of General Medical SciencesOncogenicPilot ProjectsPostdoctoral FellowPrevention therapyProliferatingPropertyRegulationResearchResearch ActivityResearch InstituteResearch PersonnelResearch Project GrantsRoleScienceScientistSkinSolid NeoplasmSumSystemSystems BiologyTechnologyTissuesTrainingTraining ActivityUniversitiesWorkXenograft ModelXenograft procedureanticancer researcharmcancer cellcancer preventioncancer typecell transformationcomplex biological systemsdesigngenome-wide analysisgraduate studentimprovedleukemiamathematical modelmelanocytemelanomamemberneoplastic cellnon-geneticnovel strategiesoutreachprogramsresponse to injuryself organizationsingle cell analysistranscriptomicstreatment responsetumor growthtumor progression
中文摘要
拟议中的癌症系统生物学中心,将被称为复杂性中心,
癌症合作与共同体,是系统生物学和癌症生物学的共同努力
加州大学欧文分校(UCI)的社区,由两项校园范围的研究代表
组织、复杂生物系统中心和UCI癌症研究所。这个
中心将解决关于癌症系统的各种基本和根本问题,以及它们为什么
就像他们一样有条理。该中心研究计划的前提是癌细胞
在复杂的环境中繁殖和进化,这些环境被高度选中以实现强大的控制
生长和分化,癌细胞的行为只有在
控制该控件的设计原则的上下文。
如本提案所述,该中心将开展三个协调的、以团队为导向的研究项目
关于背景、合作和社区在癌症发生和发展中的作用。一
该项目将利用来自结肠癌异种移植模型的新观察结果来研究非遗传学
实体肿瘤的异质性,其起源及其与肿瘤生长和治疗反应的相关性。
第二个项目将调查黑色素瘤的细胞起源,试图澄清两者之间的关系
黑色素瘤和良性病变(黑色素细胞痣)之间的关系
事件。这项工作将集中在黑素细胞前体之间的相互作用,在皮肤环境中,
在促进从良性向恶性进展的条件下。第三个项目将重点放在
考虑相互作用的慢性粒细胞白血病(CML)及其治疗模型的改进
在等级谱系、细胞间反馈和动力学之间。这三个项目将合并在一起
数学建模、基因组学和动物模型的实验操作。三个人都会是
由在单细胞水平上研究肿瘤细胞的核心设施提供服务,提供访问最新的
在单细胞基因组、转录组和其他技术方面。该中心还将支持短期、
由教员和受训人员(研究生和
博士后研究员),以及旨在扩大和丰富
癌症系统生物学社区,在大学内,在更大的科学界,以及
在公众中。最后,该中心将协调其研究和外展活动。
NCI癌症系统生物学网络中的其他中心。
英文摘要
The proposed Center for Cancer Systems Biology, to be known as the Center for Complexity,
Cooperation and Community in Cancer, is a joint effort by the systems biology and cancer biology
communities at the University of California Irvine (UCI), as represented by two campus-wide research
organizations, the Center for Complex Biological Systems and the UCI Cancer Research Institute. The
center will tackle a variety of basic and fundamental questions about cancer systems, and why they are
organized as they are. The premise underlying the research program of the center is that cancer cells
proliferate and evolve in complex environments that have been highly selected for the robust control of
growth and differentiation, and that the behaviors of cancer cells can only be fully understood in the
context of the design principles that govern that control.
As described in this proposal, the center will carry out three coordinated, team-oriented research projects
on the role of context, cooperation and community in the initiation and progression of cancer. One
project will leverage new observations from xenograft models of colon cancer to investigate non-genetic
heterogeneity in solid tumors, both its origins and its relevance to tumor growth and response to therapy.
A second project will investigate the cellular origins of melanoma, seeking to clarify the relationship
between melanoma and the benign lesions (melanocytic nevi) that are driven by a common oncogenic
event. This work will focus on interactions among melanocyte precursors, within the skin environment,
and under conditions that promote progression from benign to malignant. The third project will focus on
improving models of chronic myeloid leukemia (CML) and its treatment, taking into account interactions
between hierarchical lineages, intercellular feedback, and dynamics. All three projects will combine
mathematical modeling, genomics, and experimental manipulation of animal models. All three will be
served by a core facility for investigating tumor cells at the single cell level, providing access to the latest
in single-cell genomic, transcriptomic and other technologies. The center will also support short-term,
interdisciplinary pilot projects initiated both by faculty and by trainees (graduate students and
postdoctoral fellows), as well as a wide variety of outreach activities aimed at expanding and enriching
the cancer systems biology community both within the university, in the larger scientific community, and
among the public. Finally, the center will coordinate its research and outreach activities with those of
other centers in the NCI Cancer Systems Biology network.
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DOI:
10.7554/elife.61026
发表时间:
2020-10-13
期刊:
eLife
影响因子:
7.7
作者:
[Ruiz-Vega R, Chen CF, Razzak E, Vasudeva P, Krasieva TB, Shiu J, Caldwell MG, Yan H, Lowengrub J, Ganesan AK, Lander AD]
通讯作者:
Lander AD
DOI:
10.1039/d0lc01216e
发表时间:
2021-04-07
期刊:
Lab on a chip
影响因子:
6.1
作者:
[Hachey SJ, Movsesyan S, Nguyen QH, Burton-Sojo G, Tankazyan A, Wu J, Hoang T, Zhao D, Wang S, Hatch MM, Celaya E, Gomez S, Chen GT, Davis RT, Nee K, Pervolarakis N, Lawson DA, Kessenbrock K, Lee AP, Lowengrub J, Waterman ML, Hughes CCW]
通讯作者:
Hughes CCW
DOI:
10.7554/elife.71953
发表时间:
2022-04-13
期刊:
ELIFE
影响因子:
7.7
作者:
[Wang, Yifan, Boland, C. Richard, Goel, Ajay, Wodarz, Dominik, Komarova, Natalia L.]
通讯作者:
Komarova, Natalia L.
Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples.
从癌症样本的横截面转录组数据推断潜在的时间进展和调控网络
DOI:
10.1371/journal.pcbi.1008379
发表时间:
2021-03
期刊:
PLoS computational biology
影响因子:
4.3
作者:
[Sun X, Zhang J, Nie Q]
通讯作者:
Nie Q
DOI:
10.1371/journal.pcbi.1010039
发表时间:
2022-05
期刊:
PLoS computational biology
影响因子:
4.3
作者:
[]
通讯作者:
共 13 条
Mathematical, Computational and Systems Biology
-
批准号:10642829
-
项目类别:
-
资助金额:$36.19万
-
财政年份:2020
-
负责人:Arthur D Lander
-
依托单位:
Mentor Training to enhance mentorship in an interdisciplinary training program
-
批准号:10393853
-
项目类别:
-
资助金额:$8.64万
-
财政年份:2020
-
负责人:Arthur D Lander
-
依托单位:
Mathematical, Computational and Systems Biology
-
批准号:10172935
-
项目类别:
-
资助金额:$43.03万
-
财政年份:2020
-
负责人:Arthur D Lander
-
依托单位:
Mathematical, Computational and Systems Biology
-
批准号:10430156
-
项目类别:
-
资助金额:$46.31万
-
财政年份:2020
-
负责人:Arthur D Lander
-
依托单位:
Systems Biology Core
-
批准号:10199940
-
项目类别:
-
资助金额:$20.72万
-
财政年份:2019
-
负责人:Arthur D Lander
-
依托单位:
Systems Biology Core
-
批准号:10385798
-
项目类别:
-
资助金额:$20.72万
-
财政年份:2019
-
负责人:Arthur D Lander
-
依托单位:
Systems Biology Core
-
批准号:10618820
-
项目类别:
-
资助金额:$20.72万
-
财政年份:2019
-
负责人:Arthur D Lander
-
依托单位:
Outreach Core
-
批准号:10392895
-
项目类别:
-
资助金额:$16.75万
-
财政年份:2018
-
负责人:Arthur D Lander
-
依托单位:
PROJECT II: Vertebrate Animal Models of Cornelia de Lange Syndrome
-
批准号:8378230
-
项目类别:
-
资助金额:$50.67万
-
财政年份:2012
-
负责人:Arthur D Lander
-
依托单位:
A National Short Course in Systems Biology: Tackling Spatial Dynamics in Cells an
-
批准号:8079134
-
项目类别:
-
资助金额:$18.36万
-
财政年份:2011
-
负责人:Arthur D Lander
-
依托单位:
A National Short Course in Systems Biology: Tackling Spatial Dynamics in Cells an
-
批准号:8310057
-
项目类别:
-
资助金额:$17.92万
-
财政年份:2011
-
负责人:Arthur D Lander
-
依托单位:
A National Short Course in Systems Biology: Tackling Spatial Dynamics in Cells an
-
批准号:8668078
-
项目类别:
-
资助金额:$16.71万
-
财政年份:2011
-
负责人:Arthur D Lander
-
依托单位:
THE MECHANISM OF DPP TRANSPORTATION
-
批准号:8365759
-
项目类别:
-
资助金额:$1.98万
-
财政年份:2011
-
负责人:Arthur D Lander
-
依托单位:
A National Short Course in Systems Biology: Tackling Spatial Dynamics in Cells an
-
批准号:8474792
-
项目类别:
-
资助金额:$16.35万
-
财政年份:2011
-
负责人:Arthur D Lander
-
依托单位:
A National Short Course in Systems Biology: Tackling Spatial Dynamics in Cells an
-
批准号:8854097
-
项目类别:
-
资助金额:$16.47万
-
财政年份:2011
-
负责人:Arthur D Lander
-
依托单位:
THE MECHANISM OF DPP TRANSPORTATION
-
批准号:8170980
-
项目类别:
-
资助金额:$1.66万
-
财政年份:2010
-
负责人:Arthur D Lander
-
依托单位:
Systems Biology of Morphogenesis and Spatial Information Flow
-
批准号:8053161
-
项目类别:
-
资助金额:$17.59万
-
财政年份:2010
-
负责人:Arthur D Lander
-
依托单位:
COURSE ON CELL BIOLOGY & MICROSCOPY FOR THE INCOMING MCSB GRAD STUDENTS
-
批准号:8170958
-
项目类别:
-
资助金额:$0.18万
-
财政年份:2010
-
负责人:Arthur D Lander
-
依托单位:
THE MECHANISM OF DPP TRANSPORTATION
-
批准号:7956564
-
项目类别:
-
资助金额:$5.85万
-
财政年份:2009
-
负责人:Arthur D Lander
-
依托单位:
Mathematical, Computational and Systems Biology
-
批准号:7798986
-
项目类别:
-
资助金额:$22.53万
-
财政年份:2009
-
负责人:Arthur D Lander
-
依托单位:
海外基金