Biomarker of Lung Disease in African Americans
Biomarker of Lung Disease in African Americans
批准号:
10471583
负责人:
RUSSELL Paul BOWLER
金额:
$17.79万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2018
资助国家:
美国
项目状态:
已结题
起止时间:
2018-08-15 至 2023-05-31
关键词:
AddressAdmixtureAdvanced Glycosylation End ProductsAfricanAfrican AmericanAsiansBiological MarkersBloodCause of DeathChronic Obstructive Airway DiseaseClinicalClinical TrialsCollaborationsDataDiagnostic testsDiseaseDisease PathwayDisease ProgressionDistalEarly treatmentEuropeanFDA approvedFibrinogenFunctional ImagingFundingGene ProteinsGeneticGenomicsGoalsKnowledgeLatinoLeadLongitudinal cohortLungLung diseasesMessenger RNAMicroRNAsMinorityMolecularMolecular ProfilingNational Heart, Lung, and Blood InstituteNot Hispanic or LatinoParticipantPathogenesisPathway interactionsPatientsPhenotypePlasmaPopulationPopulation Attributable RisksPrecision HealthPreventionPrognosisProteinsProteomicsPublicationsPulmonary EmphysemaResearch PersonnelRiskRisk FactorsSeveritiesSeverity of illnessSmokerSmokingTestingUnited StatesUnited States National Institutes of HealthWhole Bloodairway obstructionbasebiobankchronic airflow obstructioncohortcostdisease phenotypedisorder riskformer smokergenetic variantgenome sequencinghealth disparityhigh riskimprovedmolecular subtypesnovelnovel diagnosticsnovel markerprecision medicineprogression markerprotein expressionprotein protein interactionproteomic signaturepulmonary functionracial differencereceptorsmoking-related lung diseasetranscriptome sequencingtranscriptomicstreatment strategyvirtualwhole genome
中文摘要
项目摘要/摘要
慢性阻塞性肺病(COPD)是美国第三大死因。
COPD主要发生在吸烟者中,目前尚不清楚为什么只有一小部分吸烟者(~20%-40%)发病
慢性气流受限或远端空间破坏(肺气肿)。鉴定分子图谱的来源
可能进展的现任或既往吸烟者是了解糖尿病发病机制的关键一步
慢性阻塞性肺病和肺气肿。
这项研究将利用大型NIH-
支持的队列(COPDgene、SPIROMICS和MESA-LONG)具有大量特征良好的
非裔美国人患有或有患慢性阻塞性肺病的风险。因为受试者已经储存了血浆
经过7-10年的广泛临床、生理和成像,我们可以非常经济高效地应用
蛋白质组学方法。此外,因为队列拥有其他有价值的Omics数据,所以我们可以集成
蛋白质组学发现与全基因组测序和其他高级分子研究,如基因组学。
这一知识可能有助于开发新的诊断测试和治疗方法,用于早期预防和治疗
并将确定任何针对非裔美国人吸烟相关肺部疾病的标志物。
英文摘要
PROJECT SUMMARY/ABSTRACT
Chronic obstructive pulmonary disease (COPD) is the 3rd leading cause of death in the US1,2. Although
COPD occurs predominantly in smokers, it is unknown why only a minority of smokers (~20-40%) develops
chronic airflow limitation or destruction of distal airspaces (emphysema). Identification molecular profiles from
current or former smokers who are likely to progress is a crucial step in understanding the pathogenesis of
COPD and emphysema. There are very few publications that describe COPD biomarkers in large, well
phenotyped cohorts that include a significant number of African Americans. This study will leverage large NIH-
supported cohorts (COPDGene, SPIROMICS, and MESA-Lung) that have large number of well-characterized
African Americans subjects with or at risk for COPD. Since the subjects have stored plasma and have been
followed for 7-10 years with extensive clinical, physiologic, and imaging, we can very cost-effectively apply a
proteomic approach. Furthermore, because the cohorts have other valuable Omics data, we can integrate the
proteomic findings with whole genome sequencing and other advanced molecular studies such as genomics.
This knowledge may help develop novel diagnostic tests and therapies for early prevention and treatment of
COPD and will identify any markers that are specific to smoking-related lung disease in African Americans.
期刊论文(8)
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DOI:
10.1093/bioinformatics/btac818
发表时间:
2023-01-01
期刊:
Bioinformatics (Oxford, England)
影响因子:
--
作者:
[]
通讯作者:
DOI:
10.3389/fgene.2021.760299
发表时间:
2021
期刊:
Frontiers in genetics
影响因子:
3.7
作者:
[Zhuang Y, Xing F, Ghosh D, Banaei-Kashani F, Bowler RP, Kechris K]
通讯作者:
Kechris K
DOI:
10.1109/bibm55620.2022.9995707
发表时间:
2022-12
期刊:
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine
影响因子:
--
作者:
[Hussein, Sundous, Vu, Thao, Lange, Leslie, Bowler, Russell P, Kechris, Katerina J, Banaei-Kashani, Farnoush]
通讯作者:
Banaei-Kashani, Farnoush
Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification.
多摩斯网络中的显着子图检测用于疾病途径鉴定。
DOI:
10.3389/fdata.2022.894632
发表时间:
2022
期刊:
Frontiers in big data
影响因子:
3.1
作者:
[Abdel-Hafiz M, Najafi M, Helmi S, Pratte KA, Zhuang Y, Liu W, Kechris KJ, Bowler RP, Lange L, Banaei-Kashani F]
通讯作者:
Banaei-Kashani F
DOI:
10.3389/fgene.2021.748356
发表时间:
2021
期刊:
Frontiers in genetics
影响因子:
3.7
作者:
[Zhuang Y, Hobbs BD, Hersh CP, Kechris K]
通讯作者:
Kechris K
Multi-omic networks associated with COPD progression in TOPMed Cohorts
-
批准号:10592280
-
项目类别:
-
资助金额:$75.09万
-
财政年份:2020
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Multi-omic networks associated with COPD progression in TOPMed Cohorts
-
批准号:10376750
-
项目类别:
-
资助金额:$75.4万
-
财政年份:2020
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Biomarker of Lung Disease in African Americans
-
批准号:9755496
-
项目类别:
-
资助金额:$80.59万
-
财政年份:2018
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Biomarker of Lung Disease in African Americans
-
批准号:10198999
-
项目类别:
-
资助金额:$75.62万
-
财政年份:2018
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Biomarker of Lung Disease in African Americans
-
批准号:9980976
-
项目类别:
-
资助金额:$79.31万
-
财政年份:2018
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Omics Data Integration to Identify Disease Pathways in COPD
-
批准号:9440672
-
项目类别:
-
资助金额:$11.73万
-
财政年份:2017
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Sphingolipids and inflammatory biomarkers of COPD progression in healthy smokers
-
批准号:8997390
-
项目类别:
-
资助金额:$39.51万
-
财政年份:2015
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Sphingolipids and inflammatory biomarkers of COPD progression in healthy smokers
-
批准号:9323560
-
项目类别:
-
资助金额:$39.63万
-
财政年份:2015
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
New Strategies and Challenges in Lung Proteomics and Metabolomics
-
批准号:8911120
-
项目类别:
-
资助金额:$0.5万
-
财政年份:2015
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Sphingolipids and inflammatory biomarkers of COPD progression in healthy smokers
-
批准号:9144844
-
项目类别:
-
资助金额:$39.63万
-
财政年份:2015
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Investigating the role of the R213G SOD3 polymorphism in lung disease
-
批准号:8495406
-
项目类别:
-
资助金额:$30.01万
-
财政年份:2012
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Investigating the role of the R213G SOD3 polymorphism in lung disease
-
批准号:8656652
-
项目类别:
-
资助金额:$29.62万
-
财政年份:2012
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Metabolic profiles of COPD phenotypes
-
批准号:8286495
-
项目类别:
-
资助金额:$73.86万
-
财政年份:2012
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Metabolic profiles of COPD phenotypes
-
批准号:8454477
-
项目类别:
-
资助金额:$115.34万
-
财政年份:2012
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Investigating the role of the R213G SOD3 polymorphism in lung disease
-
批准号:8848108
-
项目类别:
-
资助金额:$28.1万
-
财政年份:2012
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Investigating the role of the R213G SOD3 polymorphism in lung disease
-
批准号:8371183
-
项目类别:
-
资助金额:$27.16万
-
财政年份:2012
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Metabolome and proteome profiles of emphysema and airway disease
-
批准号:8052894
-
项目类别:
-
资助金额:$39.34万
-
财政年份:2009
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Metabolome and proteome profiles of emphysema and airway disease
-
批准号:8242102
-
项目类别:
-
资助金额:$38.95万
-
财政年份:2009
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Metabolome and proteome profiles of emphysema and airway disease
-
批准号:7802272
-
项目类别:
-
资助金额:$39.0万
-
财政年份:2009
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
Metabolome and proteome profiles of emphysema and airway disease
-
批准号:7689051
-
项目类别:
-
资助金额:$39.0万
-
财政年份:2009
-
负责人:RUSSELL Paul BOWLER
-
依托单位:
海外基金