Molecular functions of Tcf-1 in DP thymocytes

DP胸腺细胞中Tcf-1的分子功能

• 批准号: 10507783
• 负责人: Fotini Gounari
• 金额: $ 41.5万
• 依托单位: MAYO CLINIC ARIZONA
• 依托单位国家: 美国
• 财政年份: 2019
• 资助国家: 美国
• 起止时间: 2019-11-22 至 2024-10-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10507783
• 关键词: 3-Dimensional; Ablation; Binding; Binding Proteins; Binding Sites; CD8B1 gene; Cell Lineage; Cell Proliferation; Cells; Chromatin; Chromatin Structure; Complex; DNA; DNA Binding; DNA Binding Domain; DNA Sequence; DNA-Binding Proteins; Data; Development; Developmental Process; Differentiated Gene; Disease; E-Box Elements; Enhancers; Epigenetic Process; Eukaryota; Event; Family; Gene Activation; Gene Expression; Gene Expression Profile; Genes; Genetic Transcription; Goals; Immune; Immunity; Individual; Internet; Knowledge; Length; Literature; Mediating; Molecular; Molecular Conformation; Mus; Mutate; Nuclear; Outcome; Process; Promoter Regions; Protein Isoforms; Proteins; Regulation; Regulatory Element; Research; Role; Series; Shapes; Site; T cell differentiation; T cell transcription factor 1; T-Cell Development; T-Lymphocyte; Testing; Therapeutic Intervention; Thymocyte Development; Thymus Gland; Tissues; beta catenin; cdc Genes; gene repression; genetic regulatory protein; genome-wide; lymphoid enhancer-binding factor 1; member; molecular modeling; novel; programs; promoter; protein complex; recruit; thymocyte

PROJECT SUMMARY Thymic development is highly responsible for shaping a healthy and balanced T cell immunity. Like other developmental processes it involves coordinated changes in the linear and three-dimensional chromatin organization that allow stage specific transcription events. A central regulator at nearly every stage of T cell differentiation is the DNA binding protein Tcf-1. Studies proposed here will elucidate how Tcf-1 coordinates the action of epigenetic and transcription regulators to instruct the differentiation of CD4+CD8+ DP thymocytes. Tcf- 1 modulates the chromatin landscapes and transcription profiles directly through binding to its conserved DNA sequence, or indirectly in association with other regulatory proteins. DP thymocytes express two forms of Tcf- 1, the full length Tcf-1p45 protein that binds β-catenin, and a short Tcf-1p38 isoform that does not. Lef-1, another member of the Tcf/Lef family of regulators, also expressed in thymocytes has overlapping functions with Tcf-1. In addition Tcf-1 cooperates with the HLH domain DNA binding protein HEB at the DP thymocyte stages through the sharing of ~7000 DNA binding sites genome wide. The presence of both Tcf-1 and HEB at the shared sites is necessary to promote chromatin accessibility and regulate gene transcription. The direct Tcf-1- HEB binding to their conserved motifs in enhancer regions of T cell differentiation genes promotes their expression. By contrast Tcf-1-HEB recruitment to sites lacking conserved motifs, in promoter regions of cell- cycle genes reduces their expression and cell proliferation. Such opposing transcription outcomes likely involve Tcf-1-HEB recruitment to DNA in the context of distinct regulatory complexes. The composition of complexes containing Tcf-1 and HEB, the specific Tcf-1 isoform involved in each complex, and which functions are redundant between Tcf-1 and Lef-1, still remain to be elucidated. The intricate functional co-operation between these factors likely also involves the ability of Tcf-1 and Lef-1 to bend the DNA helix at their binding site which may modulate the 3D chromatin conformation, and define the proximity between co-operating factors and regulatory elements. These findings and the existing literature provide strong premise for the hypothesis that DP thymocyte development is enabled by the cooperation of Tcf-1 isoforms with protein complexes that shape the 3D chromatin structure to differentially regulate gene expression. Two specific aims are proposed. Aim 1 will determine the how Tcf-1p45 and, Tcf-1p33, co-operate with Lef-1 and HEB in the context of distinct regulatory complexes to establish the epigenetic and transcription profile of DP thymocytes and control their developmental progression. Aim 2: will elucidate the roles of Tcf-1p45, Tcf-1p33, Lef-1 with HEB shaping the chromatin conformation, and how this function promotes DP thymocyte development. The proposed studies are expected to highlight a completely new layer in the molecular regulation of DP thymocytes.

项目总结 胸腺的发育对形成健康和平衡的T细胞免疫有很大的作用。像其他人一样 它涉及到线性和三维染色质的协调变化 允许上演特定转录事件的组织。几乎在T细胞的每个阶段都有中央调节器 分化是DNA结合蛋白Tcf-1。这里提出的研究将阐明Tcf-1如何协调 表观遗传和转录调控因子对胸腺细胞分化的调控作用Tcf- 1通过与其保守的DNA结合，直接调节染色质景观和转录图谱。 序列，或间接地与其他调节蛋白相关联。DP胸腺细胞表达两种形式的Tcf- 1，与β-连环蛋白结合的全长Tcf-1p45蛋白，以及不结合Tcf-1p38的短Tcf-1p38亚型。Lef-1，另一个 Tcf/Lef家族的成员，也表达在胸腺细胞中，与Tcf-1的功能重叠。 此外，Tcf-1在DP胸腺细胞阶段与HLH域DNA结合蛋白Heb协同作用 通过在全基因组范围内共享~7000个DNA结合位点。Tcf-1和Heb都存在于 共有的位点对于促进染色质的可及性和调控基因转录是必要的。直接Tcf-1- Heb与T细胞分化基因增强子区的保守基序结合促进T细胞分化基因 表情。相比之下，Tcf-1-heb募集到缺乏保守基序的位置，在细胞的启动子区- 周期基因减少了它们的表达和细胞增殖。这种相反的转录结果可能涉及 Tcf-1-heb在不同调控复合体背景下向DNA的募集。络合物的组成 包含Tcf-1和Heb，每个复合体中涉及的特定Tcf-1亚型，以及哪些功能 Tcf-1和Lef-1之间的冗余，仍有待阐明。两国之间复杂的功能合作 这些因素可能还涉及Tcf-1和Lef-1在其结合部位弯曲DNA螺旋的能力 可以调节3D染色质构象，并定义协同作用因子和 监管要素。这些发现和现有的文献为假设提供了强有力的前提 DP胸腺细胞的发育是通过Tcf-1亚型与形成 3D染色质结构，以差异调节基因表达。提出了两个具体目标。目标1 将决定Tcf-1p45和Tcf-1p33如何在不同的监管背景下与Lef-1和Heb合作 建立DP胸腺细胞的表观遗传学和转录图谱并控制其 发育进程。目的2：将阐明Tcf-1p45、Tcf-1p33、Lef-1与Heb共同作用 染色质构象，以及这一功能如何促进DP胸腺细胞的发育。建议进行的研究 有望在DP胸腺细胞的分子调控中突显出一个全新的层面。