Systematic approaches to deciphering regulation and function of RNA editing in brain

破译大脑中 RNA 编辑调控和功能的系统方法

• 批准号: 10521265
• 负责人: Xinshu Grace Xiao
• 金额: $ 52.32万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-12-01 至 2025-10-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10521265
• 关键词: 3' Untranslated Regions; ASD patient; Address; Adenosine; Affect; Alzheimer' s Disease; Amino Acid Sequence; Amyotrophic Lateral Sclerosis; Animals; Area; Autopsy; Bioinformatics; Biological Assay; Brain; Cells; Code; Cognition; Collection; Complement; Data; Data Set; Development; Disease; Double-Stranded RNA; Embryo; Enzymes; Evolution; Future; Gene Expression Regulation; Genes; Genetic Transcription; Genomics; Health; Human; Human Biology; Individual; Inosine; Introns; Life; Malignant Neoplasms; Mammals; Membrane; Mental Depression; Messenger RNA; Methodology; Methods; Modification; Molecular; Nervous System; Neurobiology; Neurodevelopmental Disorder; Neurologic Dysfunctions; Nucleotides; Organism; Pattern; Phenotype; Post-Transcriptional Regulation; Primates; Protein Family; Proteins; Publishing; RNA; RNA Editing; RNA Processing; RNA Sequences; RNA analysis; RNA-Binding Proteins; Regulation; Reporter; Reporting; Research; Role; Sampling; Schizophrenia; Series; Signal Transduction; Site; Technology; Testing; Tissues; Untranslated RNA; Untranslated Regions; Variant; Work; autism spectrum disorder; biological systems; cell type; comparison control; dsRNA adenosine deaminase; experimental study; genetic regulatory protein; high throughput screening; human disease; insight; neuropsychiatric disorder; neurotransmission; novel; success; transcriptome; transcriptome sequencing

Project Summary Recent advances in sequencing technologies and bioinformatic methodologies have enabled great progress in better understanding RNA processing, regulation and modification. RNA editing is a prevalent type of RNA modification where the RNA sequences are altered through insertion, deletion or substitution of nucleotides. In mammals, the most common type of RNA editing is adenosine to inosine (A-to-I) editing. A-to-I editing is essential for normal life and development. A handful of A-to-I editing sites have been discovered with critical roles in neuronal signaling, by modulating membrane excitability, neurotransmission plasticity and signal transduction. In addition, aberrant RNA editing has been implicated in human neuropsychiatric diseases, such as Autism, Alzheimer’s disease, depression, schizophrenia, and amyotrophic lateral sclerosis. While numerous RNA editing sites have been identified via RNA-sequencing (RNA-seq) and related technologies, major challenges exist in understanding the function and regulation of RNA editing. The vast majority of known human RNA editing sites reside in non- coding regions, such as introns and untranslated regions, that may confer regulatory function to the related gene, especially at the level of post-transcriptional regulation. Therefore, there is a great demand for in-depth studies of the functional impacts of RNA editing on post- transcriptional regulation. The regulatory mechanisms of RNA editing are poorly characterized. Except the ADAR enzymes, few proteins and their mechanisms of action have been examined for RNA editing. A major challenge is the lack of efficient and systematic methods to pinpoint novel regulators. In this project, we propose to extend our recent success at developing bioinformatic and experimental frameworks to address the above challenges. We will capitalize on the large collection of RNA-seq data sets derived from postmortem brain samples. We will develop and apply novel methodologies to make full use of these data sets, complemented by further bioinformatic prediction and high-throughput experimental testing, to predict and validate the molecular function of RNA editing and related regulatory mechanisms. This work will allow a previously unattained level of understanding of the molecular basis of RNA editing and provide new insights to the involvement of RNA editing in human biology.

项目摘要 测序技术和生物信息学方法的最新进展使得 在更好地理解RNA加工、调节和修饰方面取得了巨大进展。RNA 编辑是一种普遍的RNA修饰类型，其中RNA序列通过以下方式改变： 核苷酸的插入、缺失或取代。在哺乳动物中，最常见的RNA类型 编辑是腺苷到肌苷（A-to-I）编辑。A对I编辑对正常生活至关重要， 发展已经发现了一些A-to-I编辑网站，它们在以下方面发挥着关键作用： 神经元信号，通过调节膜兴奋性，神经传递可塑性和信号 转导此外，异常的RNA编辑与人类神经精神疾病有关。 疾病，如自闭症，阿尔茨海默氏病，抑郁症，精神分裂症，和肌萎缩 侧索硬化虽然已经通过RNA测序鉴定了许多RNA编辑位点， （RNA-seq）和相关技术，在理解功能和 调节RNA编辑。绝大多数已知的人类RNA编辑位点位于非- 编码区，如内含子和非翻译区，可以赋予调节功能， 相关基因，特别是在转录后水平的调控。因此有 深入研究RNA编辑对后基因组的功能影响的巨大需求， 转录调控RNA编辑的调控机制还不清楚。 除了阿达尔酶外，很少有蛋白质及其作用机制被研究 for RNA RNA编辑.一个主要的挑战是缺乏有效和系统的方法来查明 新型调节器。在这个项目中，我们建议扩大我们最近在开发方面的成功， 生物信息学和实验框架，以应对上述挑战。我们将利用 从死后大脑样本中提取的大量RNA-seq数据集。我们将 开发和应用新的方法，充分利用这些数据集，并辅之以 进一步的生物信息学预测和高通量实验测试，以预测和验证 RNA编辑的分子功能及相关调控机制。这项工作将允许一个 以前没有达到的水平的理解RNA编辑的分子基础，并提供 对RNA编辑参与人类生物学的新见解。