Regulation of translesion synthesis by the bacterial replisome

细菌复制体对跨损伤合成的调节

• 批准号: 10543767
• 负责人: Joseph J. Loparo
• 金额: $ 34.75万
• 依托单位: HARVARD MEDICAL SCHOOL
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-05-15 至 2024-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10543767
• 关键词: Ablation; Acceleration; Affect; Antibiotic Resistance; Antimicrobial Resistance; Binding; Binding Sites; Biochemical; Biological Assay; Bypass; C-terminal; Cell Death; Cells; Chemicals; Closure by clamp; Complex; DNA; DNA Damage; DNA Double Strand Break; DNA Polymerase II; DNA Polymerase III; DNA biosynthesis; DNA lesion; DNA replication fork; Dangerousness; Data; Development; Dissociation; Double Strand Break Repair; Escherichia coli; Event; Exclusion; Filament; Fluorescence Resonance Energy Transfer; Funding; Genetic; Genome Stability; Genomic Instability; Hand; Image; In Vitro; Kinetics; Left; Length; Lesion; Mediating; Methyl Methanesulfonate; Microscopy; Molecular; Molecular Conformation; Multiprotein Complexes; Mutagenesis; Pathway interactions; Play; Polymerase; Property; Proteins; Regulation; Resolution; Role; Signal Transduction; Single-Stranded DNA; Site; Source; Surface; Tail; Testing; Work; chromosome replication; genetic approach; helicase; molecular imaging; mutant; reconstitution; recruit; repaired; single molecule; single-molecule FRET; stoichiometry; tumor progression

Project Summary DNA damage blocks the progress of the replisome. Left unresolved these lesions can result in cell death. A prominent resolution mechanism is translesion synthesis (TLS), a DNA damage tolerance pathway in which an error-prone TLS polymerase switches with a high fidelity replicative polymerase to synthesize past the lesion, enabling the replisome to progress past the damage. While TLS polymerases contribute to genome stability, their misregulation has been implicated in both cancer progression and the development of antimicrobial resistance. This proposal will employ biochemical and genetic approaches in combination with in vitro and cell based single-molecule imaging to understand how TLS is regulated during bacterial replication. Aim 1: Elucidate the role of SSB in regulating Pol IV-mediated TLS We have demonstrated that the TLS polymerase Pol IV is recruited to replisomes in a DNA damage dependent manner through interactions with SSB. As SSB is constitutively present in the replisome this raises the question of how Pol IV is selectively targeted to stalled forks. In this aim we will work to elucidate this mechanism by determining the dynamics of SSB and the molecular events that lead to Pol IV recruitment. Finally, by using single-molecule imaging of other SSB-interacting proteins (SIPs), we will test if damage- dependent replisome recruitment is a general mechanism or if it is unique to Pol IV. Aim 2: Is an interaction with SSB important for recruiting TLS polymerases to their site of action? Building on our observations that the interaction of Pol IV with SSB is critical for its ability to carry out TLS, we will determine if an interaction between Pol II and SSB is also important for its function. In this aim we will develop mutants that selectively ablate the Pol II-SSB interaction. With these mutants in hand we will next ask whether the Pol II-SSB interaction is required for the recruitment of Pol II to stalled replisomes and TLS. Furthermore, we will determine the role of the Pol IV-SSB interaction in mutagenic DNA double strand break repair, a pathway implicated in adaptive mutagenesis and antibiotic resistance. Aim 3: How do conformational dynamics of Pol III regulate TLS polymerase access and synthesis? In order to determine how Pol IV binds and dissociates from the b2 clamp, we will use single-molecule FRET to follow the conformational dynamics of the polymerase-clamp complex during active replication. Furthermore, we will determine how DNA lesions on the template strand influence these conformational dynamics. Aim 4: Identify factors that influence the competition between TLS at the fork and repriming Repriming of DNA synthesis downstream of a lesion competes with TLS to resolve stalled replication forks. We present preliminary cellular and in vitro data that accessory helicases accelerate repriming kinetics. In this aim we will work to identify the helicases that can exert this effect and their mechanism of action.

项目摘要 DNA损伤阻碍了复制体的进程。如果这些病变得不到解决，可能导致细胞死亡。一 一个突出的解决机制是跨损伤合成（TLS），这是一种DNA损伤耐受途径， 易错TLS聚合酶与高保真复制聚合酶切换以合成通过损伤， 使复制体能够越过损伤。虽然TLS聚合酶有助于基因组稳定性， 它们的失调与癌症进展和抗微生物药物的发展有关， 阻力该提案将采用生物化学和遗传学方法，结合体外和细胞培养， 基于单分子成像，以了解TLS在细菌复制过程中如何调节。 目的1：阐明SSB在调节Pol IV介导的TLS中的作用 我们已经证明，TLS聚合酶Pol IV在DNA损伤依赖性中被募集到复制体中， 通过与SSB的互动。由于SSB组成性地存在于复制体中，这引起了复制体中的 Pol IV是如何选择性地针对停滞的分叉的问题。为此，我们将努力阐明这一点。 通过确定SSB的动力学和导致Pol IV募集的分子事件来研究其机制。 最后，通过使用其他SSB相互作用蛋白（SIPs）的单分子成像，我们将测试是否损伤- 依赖性复制体募集是一种通用机制，或者它是Pol IV所特有的。 目的2：与SSB的相互作用对于将TLS聚合酶募集到其作用位点是否重要？ 基于我们的观察，即Pol IV与SSB的相互作用对其进行TLS的能力至关重要，我们 将确定Pol II和SSB之间的相互作用是否对其功能也很重要。为此，我们将 开发选择性消除Pol II-SSB相互作用的突变体。有了这些变种人我们接下来要问 Pol II向停滞的复制体和TLS的募集是否需要Pol II-SSB相互作用。 此外，我们将确定Pol IV-SSB相互作用在致突变DNA双链断裂中的作用 修复，一种涉及适应性诱变和抗生素抗性的途径。 目的3：Pol III的构象动力学如何调节TLS聚合酶的进入和合成？ 为了确定Pol IV如何与b2钳结合和解离，我们将使用单分子FRET来分析Pol IV与b2钳的结合。 在主动复制期间遵循聚合酶-钳复合物的构象动力学。此外，委员会认为， 我们将确定模板链上的DNA损伤如何影响这些构象动力学。 目标4：确定影响分叉处TLS和再启动之间竞争的因素 损伤下游DNA合成的再引发与TLS竞争以解决停滞的复制叉。我们 目前的初步细胞和体外数据，辅助解旋酶加速再引发动力学。在这一目标中， 我们将致力于鉴定能够发挥这种作用的解旋酶及其作用机制。