A systems biology analysis of eukaryotic G protein-mediated signalling

真核 G 蛋白介导的信号传导的系统生物学分析

• 批准号: BB/G01227X/1
• 负责人: Graham Ladds
• 金额: $ 50.22万
• 依托单位: University of Warwick
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2009
• 资助国家: 英国
• 起止时间: 2009 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FG01227X%2F1
• 关键词: systems; biology; analysis; eukaryotic; protein

Cells cannot live in isolation; they require signals from their environment, or neighbours to control all aspects of their behaviour. These signals inform the cell if it should grow, reproduce (divide) or even die. Cells receive many differing types of signal and are required to interpret (understand) these and to respond correctly. For mammalian cells, these responses may influence many critical processes within essential organs e.g. heart, lungs and kidneys. Errors or misinterpretation of these signals are responsible for diseases such as cancer, autoimmunity, cardiac defects, schizophrenia and diabetes. It therefore follows that, if we can perform scientific research on these signalling networks, we may be able to understand, and thereby control, the basis of these diseases. To achieve such aims requires an implicit understanding of the cellular components that contribute to activating, and terminating these signals. In recent times, basic scientific investigations utilising genetic techniques has provided many important advances in our understanding, however it is becoming apparent that to further our knowledge we are required to appreciate the large network architecture of the signalling pathways. For many years physicists have had an appreciation of the use of complex mathematical techniques to inform the contribution that hither-to unknown particles perform in the production and continued existence of the Universe. In recent times, biologists have begun to utilise mathematicians to aid in their understanding of signalling network composition. The work described in this research proposal aims to combine biological investigation with mathematical simulation, to probe a signalling network within yeast (an organism whose genome has been fully sequenced, and is easily manipulated in the laboratory) that has high similarity to that found in human cells. The signalling network under investigation is initiated by the binding of a molecule to a G protein-coupled receptor (GPCR) found on the surface of cells. GPCRs are one of the largest families of proteins in human cells and defects within these receptors and associated-signalling networks, are responsible for a range of diseases. To date approximately 50% of all drugs sold in the Western world target GPCRs. The family of regulator of G protein signalling (RGS) proteins control the amount of signalling that flows through a GPCR signal network. It has always been understood that RGS proteins 'switch-off' signalling, by reducing the concentration of active proteins in the signalling cascade. This occurs by a chemical reaction that removes a phosphate group from a molecule called GTP. However, recent data suggests that this reaction may, under conditions of high stimulation, be required for cells to achieve their maximal response. Thus the RGS protein may be acting as a binary switch such that GPCR signalling is either off or on, depending upon the level of stimulation. Central to this hypothesis is our suggestion that a state for the G protein exists that although it has the characteristics of being an active molecule is, in fact, inactive. The research in this proposal is intended at providing an in depth understanding, at the molecular level, of how RGS proteins perform these dual roles. We will use biological investigation to provide exact amounts of cellular components so enabling the production of a computational model which will generate a detailed appreciation of GPCR signalling networks in yeast. By using mathematical techniques we aim to provide a general mechanism of G protein signalling applicable to all organisms.

细胞不能孤立生存；它们需要来自环境或邻居的信号来控制它们行为的各个方面。这些信号告诉细胞它是否应该生长、繁殖（分裂）甚至死亡。细胞接收许多不同类型的信号，需要解释（理解）这些信号并做出正确的反应。对于哺乳动物细胞，这些反应可能影响心脏、肺和肾脏等重要器官的许多关键过程。对这些信号的错误或误解是导致癌症、自身免疫、心脏缺陷、精神分裂症和糖尿病等疾病的原因。因此，如果我们能够对这些信号网络进行科学研究，我们可能能够理解并从而控制这些疾病的基础。要实现这样的目标，需要对激活和终止这些信号的细胞成分有一个隐含的理解。近年来，利用遗传技术的基础科学研究为我们的理解提供了许多重要的进展，然而，为了进一步了解我们的知识，我们需要了解信号通路的大型网络结构，这一点越来越明显。多年来，物理学家一直赞赏使用复杂的数学技术来揭示迄今未知的粒子在宇宙的产生和持续存在中所做的贡献。近年来，生物学家开始利用数学家来帮助他们理解信号网络的组成。这项研究计划中描述的工作旨在将生物学研究与数学模拟结合起来，探测酵母（一种基因组已被完全测序的生物体，在实验室中很容易操作）中与人类细胞中发现的高度相似的信号网络。正在研究的信号网络是由分子与细胞表面发现的G蛋白偶联受体（GPCR）结合而启动的。gpcr是人类细胞中最大的蛋白质家族之一，这些受体和相关信号网络中的缺陷是一系列疾病的原因。迄今为止，在西方世界销售的所有药物中，约有50%是针对gpcr的。G蛋白信号（RGS）蛋白调控家族控制流经GPCR信号网络的信号量。人们一直认为，RGS蛋白通过降低信号级联中活性蛋白的浓度来“关闭”信号。这是通过一种化学反应发生的，它从一种叫做GTP的分子中去除磷酸基。然而，最近的数据表明，在高刺激条件下，这种反应可能是细胞达到最大反应所必需的。因此，RGS蛋白可能作为一个二进制开关，使GPCR信号要么关闭，要么打开，取决于刺激水平。这个假设的核心是我们的建议，即G蛋白存在一种状态，尽管它具有活性分子的特征，但实际上是不活跃的。本提案中的研究旨在提供在分子水平上对RGS蛋白如何发挥这些双重作用的深入了解。我们将使用生物学研究来提供细胞成分的确切数量，以便能够产生计算模型，该模型将产生酵母中GPCR信号网络的详细评价。通过使用数学技术，我们旨在提供适用于所有生物的G蛋白信号传导的一般机制。

项目成果

Parameter identification problems in the modelling of cell motility

细胞运动建模中的参数识别问题

• DOI: 10.48550/arxiv.1311.7602
• 发表时间: 2013
• 作者: Croft W

Additional file 1: of Feedback activation of neurofibromin terminates growth factor-induced Ras activation

附加文件1：神经纤维蛋白的反馈激活终止生长因子诱导的Ras激活

• DOI: 10.6084/m9.figshare.c.3643487_d3
• 发表时间: 2016
• 作者: Hennig A

Additional file 2: of Feedback activation of neurofibromin terminates growth factor-induced Ras activation

附加文件2：神经纤维蛋白的反馈激活终止生长因子诱导的Ras激活

• DOI: 10.6084/m9.figshare.c.3643487_d1
• 发表时间: 2016
• 作者: Hennig A

Detailed expression pattern of aldolase C (Aldoc) in the cerebellum, retina and other areas of the CNS studied in Aldoc-Venus knock-in mice.

• DOI: 10.1371/journal.pone.0086679
• 发表时间: 2014
• 期刊: PloS one
• 影响因子: 3.7
• 作者: Fujita H;Aoki H;Ajioka I;Yamazaki M;Abe M;Oh-Nishi A;Sakimura K;Sugihara I
• 通讯作者: Sugihara I

Additional file 3: of Feedback activation of neurofibromin terminates growth factor-induced Ras activation

附加文件3：神经纤维蛋白的反馈激活终止生长因子诱导的Ras激活

• DOI: 10.6084/m9.figshare.c.3643487_d2
• 发表时间: 2016
• 作者: Hennig A