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JCAMP-DX-CD: A Universal Format for CD and SRCD Spectroscopy Enabling Data Standardisation and Data Sharing

JCAMP-DX-CD: A Universal Format for CD and SRCD Spectroscopy Enabling Data Standardisation and Data Sharing
JCAMP-DX-CD:CD 和 SRCD 光谱学的通用格式,实现数据标准化和数据共享
批准号:
BB/I023887/1
负责人:
Robert Janes
金额:
$15.04万
依托单位国家:
英国
项目类别:
Research Grant
财政年份:
2011
资助国家:
英国
项目状态:
已结题
起止时间:
2011 至 --

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中文摘要
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英文摘要
Circular dichroism (CD) spectroscopy is a structural biology method that is widely used in academia and industry for the characterisation of proteins, nucleic acids, and sugars. At present there are four different types of lab-based commercial CD instruments and 14 different synchrotron radiation circular dichroism (SRCD) beamline instruments that are used to collect CD data. All of them produce output data in different formats and therefore these data are 'machine-dependent'; parameters used by one instrument from one manufacturer are not readable by instruments from another manufacturer, or by beamlines. The aims of this project are to create a common format that will contain all the relevant spectral data and machine (and sample) parameters (the 'meta-data') produced by these instruments, and to create the software to enable the interconversion between it and the existing formats of manufacturers and beamlines. We have obtained the imprimatur of the International Union of Pure and Applied Chemistry to create a (Joint Committee on Atomic and Molecular Physical Data Exchange) JCAMP-DX_CD format that will fulfill this remit. Although none of the individual instrument manufacturers or beamline scientists wishes to use the format of another company or beamline, all of them have agreed that they are willing to have us create this common format for universal usage. This will enable data sharing and standardisation and interoperability between instruments as well as cross-disciplinary usage with other spectroscopic methods, of which there are currently nine, that have JCAMP-DX formats.
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DOI: 10.1002/chir.22050
发表时间: 2012-09-01
期刊: CHIRALITY
影响因子: 2
作者: [Janes, Robert W., Miles, A. J., Wallace, B. A.]
通讯作者: Wallace, B. A.
The Protein Circular Dichroism Data Bank: A Resource for Data Sharing
蛋白质圆二色性数据库:数据共享资源
DOI: --
发表时间: 2013
期刊: BIOPHYSICAL JOURNAL
影响因子: 3.4
作者: [Whitmore Lee]
通讯作者: Whitmore Lee
DOI: 10.1351/pac-rec-12-02-03
发表时间: 2012-01-01
期刊: PURE AND APPLIED CHEMISTRY
影响因子: 1.8
作者: [Woollett, Benjamin, Klose, Daniel, Wallace, B. A.]
通讯作者: Wallace, B. A.
DOI: 10.1093/nar/gkt287
发表时间: 2013-07
期刊: Nucleic acids research
影响因子: 14.9
作者: [Woollett B, Whitmore L, Janes RW, Wallace BA]
通讯作者: Wallace BA
Bioinformatics Resources for Circular Dichroism Spectroscopy and Structural Biology: Operation, Enhancement, Curation, and New Developments
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    BB/P024106/1
  • 项目类别:
    Research Grant
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    $54.23万
  • 财政年份:
    2018
  • 负责人:
    Robert Janes
  • 依托单位:
The Protein Circular Dichroism Data Bank, the DichroWeb Server, and ValiDichro: Data Sharing, Analysis and Standards Resources for CD Spectroscopy
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    BB/J019194/1
  • 项目类别:
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    $57.41万
  • 财政年份:
    2013
  • 负责人:
    Robert Janes
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Support for the Protein Circular Dichroism Data Bank and the Dichroweb Analysis Server
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  • 项目类别:
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  • 资助金额:
    $31.45万
  • 财政年份:
    2008
  • 负责人:
    Robert Janes
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