SEQUENCE-SPECIFIC CHEMICAL NUCLEASES FOR GENOME ANALYSIS

用于基因组分析的序列特异性化学核酸酶

• 批准号: 2208670
• 负责人: DAVID S SIGMAN
• 金额: $ 10.9万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 1991
• 资助国家: 美国
• 起止时间: 1991-04-01 至 1995-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/2208670
• 关键词: DNA; DNA binding protein; RNA; bacteriophage P22; bacteriophage lambda; chemical cleavage; copper; deoxyribonuclease I; genetic manipulation; lysogeny; nucleic acid hybridization; nucleic acid sequence; nucleic acid structure; nucleotide analog; phenanthrolines; recombinant DNA; recombinase; site directed mutagenesis; synthetic nucleic acid; transcription factor

In order to facilitate genome mapping and sequencing, three approaches for targeting the chemical nuclease activity of 1,10- phenanthroline-copper(OP-Cu) to any chosen DNA sequence will be developed. In the first strategy, RNA is transcribed from the target DNA sequence using 5-allylamine-UTP in place of UTP and then chemically modified with 1,10-phenanthroline. The derivatized RNA is used to form an R-loop that provides the sequence specificity for the scission reaction which is activated by the addition of cupric ion, thiol and hydrogen peroxide. In the second method, one DNA strand of the sequence targeted for cleavage within the genome is synthesized by primer extension substituting 5-allylamine dUTP in place of TTP. .The single-strand DNA is derivatized with 1,10-phenanthroline and used as a substrate for Rec A facilitated strand invasion of the target sequence to form a D-loop. The cleavage reaction is then activated as above. Finally, the cro protein will be modified by site-directed mutagenesis to target the nuclease activity of OP-Cu. All three procedures could be used to develop sequence-specific nucleases for any preselected sequence.

为了促进基因组作图和测序， 用于靶向1，10- 菲咯啉铜（OP-Cu）的任何选择的DNA序列将开发。 在第一种策略中，RNA从靶DNA序列转录 使用5-烯丙基胺-UTP代替UTP，然后用 1，10-菲咯啉 衍生的RNA用于形成R环， 为断裂反应提供了序列特异性， 通过加入铜离子、硫醇和过氧化氢来活化。 在 第二种方法，切割靶序列的一条DNA链， 在基因组内通过引物延伸取代合成 5-烯丙胺dUTP代替TTP。单链DNA被衍生化， 与1，10-菲咯啉，并用作Rec A的底物， 链侵入靶序列以形成D环。 裂解 然后如上所述激活反应。 最后，cro蛋白将被 通过定点诱变修饰以靶向 OP-Cu。 所有这三种方法都可以用来开发序列特异性的 任何预选序列的核酸酶。

项目成果

Fluorescent avidin-bound silver particle: a strategy for single target molecule detection on a cell membrane.

• DOI: 10.1021/ac801932m
• 发表时间: 2009-02-01
• 期刊: ANALYTICAL CHEMISTRY
• 影响因子: 7.4
• 作者: Zhang, Jian;Fu, Yi;Liang, Dong;Zhao, Richard Y.;Lakowicz, Joseph R.
• 通讯作者: Lakowicz, Joseph R.

Kinetics of spontaneous displacement of RNA from heteroduplexes by DNA.

DNA 从异源双链体中自发置换 RNA 的动力学。

• DOI: 10.1093/nar/24.16.3246
• 发表时间: 1996
• 期刊: Nucleic acids research
• 影响因子: 14.9
• 作者: Landgraf,R;Ramamurthi,KS;Sigman,DS
• 通讯作者: Sigman,DS

Scission of DNA at a preselected sequence using a single-strand-specific chemical nuclease.

使用单链特异性化学核酸酶在预选序列上切割 DNA。

• DOI: 10.1016/s1074-5521(98)90621-4
• 发表时间: 1998
• 期刊: Chemistry & biology
• 作者: Chen,CH;Landgraf,R;Walts,AD;Chan,L;Schlonk,PM;Terwilliger,TC;Sigman,DS
• 通讯作者: Sigman,DS

Oligonucleotide-directed nucleic acid scission by micrococcal nuclease.

通过微球菌核酸酶进行寡核苷酸指导的核酸切割。

• DOI: 10.1021/bi00201a006
• 发表时间: 1994
• 期刊: Biochemistry
• 影响因子: 2.9
• 作者: Landgraf,R;Chen,CH;Sigman,DS
• 通讯作者: Sigman,DS

Selective growth of Ag nanodewdrops on Au nanostructures: a new type of bimetallic heterostructure.

• DOI: 10.1021/la901490w
• 发表时间: 2009-10-06
• 期刊: Langmuir : the ACS journal of surfaces and colloids
• 作者: Gao L;Fan L;Zhang J
• 通讯作者: Zhang J