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The UK High-End Computing Consortium for Biomolecular Simulation

The UK High-End Computing Consortium for Biomolecular Simulation
英国生物分子模拟高端计算联盟
批准号:
EP/R029407/2
负责人:
Syma Khalid
金额:
$16.86万
依托单位:
依托单位国家:
英国
项目类别:
Research Grant
财政年份:
2021
资助国家:
英国
项目状态:
已结题
起止时间:
2021 至 --

项目摘要

项目成果

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中文摘要
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英文摘要
There is tremendous future scope for biomolecular simulation to provide unprecedented insights into biomolecular systems. The level of detail afforded by these methods, along with their ability to rationalise experimental data and their predictive power are already enabling them to make significant contributions in a wide variety of areas that are crucial for healthcare, quality of life and the environment. The UK biomolecular simulation community has a strong international reputation, with world-leading efforts in in drug design and development, biocatalysis, bionano-technology, chemical biology and medicine. HECBioSim has already delivered outstanding research with impact in bionanotechology, drug design and AMR. But we have only just scratched the surface and there is currently huge room for expansion. Having access to the largest, most modern computing facilities is essential for this. Renewal of the Consortium will enable us to continue allocating time ARCHER for cutting-edge biomolecular simulations.We will place a special emphasis on reaching out to experimentalists and scientists working in industry in order to foster interactions between computational and experimental scientists, and academia and industry to encourage integrated multidisciplinary studies of key problems.Biomolecular simulation and modelling is an integral part of drug design and development. The pharmaceutical industry needs well-trained scientists in this area, as well as the development of new methods (e.g. for prediction of drug binding affinities, ligand selectivity and metabolism). Members of the consortium have a strong track record of collaboration with industry to deliver trained scientists and new methodologies. For example, PhD students trained by consortium members have recently taken up positions in UCB, Unilever, Oxford Nanoimaging and even Sky Broadcasting as software developer. Many of these academic-industry collaborations have been strengthened by work done through HECBioSim allocations. The Consortium will continue to welcome new members from across the whole community. We will continue to develop computational tools and training for both experts and non-experts using biomolecular simulation on HEC resources. We propose to develop new tools that will enable inter-conversion between biomolecular systems at different levels of resolution thereby allowing users to tackle more ambitious 'grand challenges' than are currently feasible.In summary HECBioSim will foster collaborations between computational and experimental scientists between scientists working in industry and academia in all disciplines within biomolecular simulation to maintain the UK as a world-leader in this field.
期刊论文(10)
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科研奖励(0)
会议论文
DOI: 10.1101/2023.03.17.533092
发表时间: 2023-03
期刊: bioRxiv
影响因子: --
作者: [Dora Buzas;H. Bunzel;Oskar Staufer;E. Milodowski;Grace Edmonds;beatriz Vidana Matteo;C. Schaffitzel;Sathish K. N. Yadav;K. Gupta;Charlotte Fletcher;M. Williamson;Alexandra Harrison;Ufuk Borucu;Julien Capin;Ore Francis;Georgia Balchin;Sophie Hall;Mirella Vivoli Vega;F. Durbesson;R. Vincentelli;Joe Roe;L. Wooldridge;R. Burt;Ross J L Anderson;A. Mulholland;J. Hare;Mick Bailey;A. Davidson;A. Finn;David Morgan;Jamie F S Mann;Joachim P. Spatz;F. Garzoni;J. Bufton;I. Berger]
通讯作者: Dora Buzas;H. Bunzel;Oskar Staufer;E. Milodowski;Grace Edmonds;beatriz Vidana Matteo;C. Schaffitzel;Sathish K. N. Yadav;K. Gupta;Charlotte Fletcher;M. Williamson;Alexandra Harrison;Ufuk Borucu;Julien Capin;Ore Francis;Georgia Balchin;Sophie Hall;Mirella Vivoli Vega;F. Durbesson;R. Vincentelli;Joe Roe;L. Wooldridge;R. Burt;Ross J L Anderson;A. Mulholland;J. Hare;Mick Bailey;A. Davidson;A. Finn;David Morgan;Jamie F S Mann;Joachim P. Spatz;F. Garzoni;J. Bufton;I. Berger
DOI: 10.1016/j.bpj.2022.11.2942
发表时间: 2023-01-03
期刊: BIOPHYSICAL JOURNAL
影响因子: 3.4
作者: [Antonovic, Anna Katarina, Ochala, Julien, Fornili, Arianna]
通讯作者: Fornili, Arianna
DOI: 10.1093/abt/tbad024
发表时间: 2023-11-10
期刊: ANTIBODY THERAPEUTICS
影响因子: --
作者: [Buzas, Dora, Bunzel, Adrian H., Berger, Imre]
通讯作者: Berger, Imre
DOI: 10.1021/acs.jctc.1c00547
发表时间: 2021-10-12
期刊: Journal of chemical theory and computation
影响因子: 5.5
作者: [Ansell TB, Curran L, Horrell MR, Pipatpolkai T, Letham SC, Song W, Siebold C, Stansfeld PJ, Sansom MSP, Corey RA]
通讯作者: Corey RA
7
    HECBioSim: The UK High End Computing Consortium for Biomolecular Simulation.
    • 批准号:
      EP/X035603/1
    • 项目类别:
      Research Grant
    • 资助金额:
      $66.07万
    • 财政年份:
      2023
    • 负责人:
      Syma Khalid
    • 依托单位:
    MOLSImage: Combining Simulations and Imaging to Deliver Next Generation Tools for Studying Bacterial Cell Envelopes.
    • 批准号:
      EP/V030779/1
    • 项目类别:
      Fellowship
    • 资助金额:
      $186.67万
    • 财政年份:
      2022
    • 负责人:
      Syma Khalid
    • 依托单位:
    The UK High-End Computing Consortium for Biomolecular Simulation
    • 批准号:
      EP/R029407/1
    • 项目类别:
      Research Grant
    • 资助金额:
      $40.96万
    • 财政年份:
      2019
    • 负责人:
      Syma Khalid
    • 依托单位:
    Molecular Basis for Substrate Recognition of Outer Membrane Proteins of the Human Pathogen Pseudomonas Aeruginosa
    • 批准号:
      BB/M029573/1
    • 项目类别:
      Research Grant
    • 资助金额:
      $33.43万
    • 财政年份:
      2016
    • 负责人:
      Syma Khalid
    • 依托单位:
    国内基金
    海外基金
    真菌特异的内吞作用相关蛋白End3发挥作用的结构研究
    • 批准号:
      32000859
    • 项目类别:
      青年科学基金项目
    • 资助金额:
      24.0万元
    • 批准年份:
      2020
    • 负责人:
      王冬立
    • 依托单位:
    从PBMC-β-END-μ-阿片受体途径探讨华蟾素治疗癌痛的外周机制
    • 批准号:
      81173612
    • 项目类别:
      面上项目
    • 资助金额:
      58.0万元
    • 批准年份:
      2011
    • 负责人:
      陈涛
    • 依托单位:
    研究EB1(End-Binding protein 1)的癌基因特性及作用机制
    • 批准号:
      30672361
    • 项目类别:
      面上项目
    • 资助金额:
      24.0万元
    • 批准年份:
      2006
    • 负责人:
      徐宁志
    • 依托单位: