STRUCTURE, ENERGETICS, AND THERMODYNAMICS OF HYDROGEN BONDED MOLECULAR CLUSTERS

氢键分子团簇的结构、能量和热力学

• 批准号: 6107147
• 负责人: GUSTAVO E LOPEZ
• 金额: $ 5.66万
• 依托单位: UNIVERSITY OF PUERTO RICO MAYAGUEZ
• 依托单位国家: 美国
• 财政年份: 1999
• 资助国家: 美国
• 起止时间: 1999-05-01 至 2000-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6107147
• 关键词: chemical kinetics; chemical models; chemical structure; computer simulation; hydrogen bond; intermolecular interaction; macromolecule; mathematical model; quantum chemistry; thermodynamics

Much can be learned about the importance of hydrogen bond interactions in biological systems from studies related to the structure, energetic and thermodynamic properties of molecular clusters. Owing to the experimental difficulties encountered in cluster studies, computer simulations have emerged as a powerful tool in the theoretical description of such systems. Based on this, we propose to study the structure and energetics of several hydrogen bonded molecular clusters by means of simulated annealing procedures. After characterizing the potential energy surface for these clusters, thermodynamic properties will be obtained using both Classical and Quantum Monte Carlo techniques. Unlike Monte Carlo methods, the Quantum Monte Carlo approach is fully quantum mechanical so that the vibrational degrees of freedom, anharmonicities and tunneling effects will be correctly and rigorously treated simultaneously. This study will rigorously include quantum effects in the thermodynamic properties of molecular clusters described with realistic inter-particle potentials. At the same time, it will address several important aspect of computer simulations such as proper sampling of configuration space and convergence of quantum thermodynamic ensemble averages. The molecular clusters to be considered have been chosen because of their importance in biologically active regions of macromolecular systems. Hence, the theoretical description will contribute to the understanding of intermolecular interactions in the specific regions of macromolecular systems.

通过对分子团簇的结构、能量和热力学性质的研究，可以了解到氢键相互作用在生物体系中的重要性。由于在团簇研究中遇到的实验困难，计算机模拟已经成为理论描述这类系统的有力工具。在此基础上，我们利用模拟退火方法研究了几种氢键分子团簇的结构和能量。在表征这些团簇的势能面之后，将使用经典和量子蒙特卡罗技术获得热力学性质。与蒙特卡罗方法不同，量子蒙特卡罗方法是完全量子力学的，因此振动自由度，非谐性和隧道效应将同时得到正确和严格的处理。这项研究将严格包括量子效应的分子团簇的热力学性质描述与现实的粒子间的潜力。同时，它将解决计算机模拟的几个重要方面，如适当的采样配置空间和收敛的量子热力学系综平均。选择要考虑的分子簇是因为它们在大分子系统的生物活性区域中的重要性。因此，理论描述将有助于理解分子间的相互作用在特定区域的大分子系统。