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INTERNAL MOTIONS IN FOLDED AND UNFOLDED STATES OF GBI

GBI 折叠和展开状态下的内部运动

基本信息

批准号：
6386966
负责人：
KEVIN H. MAYO
金额：
$ 18.88万
依托单位：
UNIVERSITY OF MINNESOTA
依托单位国家：
美国
项目类别：
财政年份：
1998
资助国家：
美国
起止时间：
1998-08-01 至 2002-07-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/6386966
关键词：
Streptococcus bacterial proteins chemical structure conformation molecular dynamics nuclear magnetic resonance spectroscopy protein denaturation protein folding protein structure radiotracer structural biology temperature

项目摘要

This proposal is focused on studying side-chain and backbone motional dynamics in Streptococcal protein G B1 domain by using 13/C and 15/N-NMR relaxation and rotational model analyses. GB1 has only 56 amino acid residues arranged in a fold with a central alpha-helix packed against a four-stranded beta-sheet. Despite its small size, the thermodynamic properties are similar to those observed in larger proteins. GB1 lends itself well to selective 13/C/15/N isotropic enrichment via peptide synthesis and to experimental study using both NMR relaxation-derived auto-and cross-peptide synthesis and to experimental study using both NMR relation-derived auto-and cross-peptide synthesis and to experimental study using both NMR relation-derived auto- and cross-correlation spectral densities for analysis of all backbone and side-chain N-H and C-H motional vectors. The specific aims of this project are: (1) to determine internal motions of all side-chain and backbone positions in unfolded states of GB1, and (3) to develop novel approaches and motional models to analyzes these NMR relaxation data. Most NMR dynamics studies reported to data, while qualitatively informative, are limited to analysis of auto-correlation parameters [usually from a single motional vector in a residue, i.e., backbone 15/N-H or 13/C/alpha-H] derived by using some model free approach. This grant stands apart from previous studies in that it will use both auto- and cross-correlation parameters from all available motional vectors (backbone and side-chain) and various rotational models and model free approaches to provide a more detailed description of motional dynamics in a protein. Dipolar and dipolar-CSA cross-correlation spectral densities, T/1, T/1p, T/2 and heteronuclear NOEs at at least two frequencies will be determined. For backbone motions, 13/C/alpha/H, 13/CO and 15/NH relaxation rates will be measured, while for side-chain motions, 13CH n auto- and cross- correlations will provide unique motional information.

本论文的研究重点是侧链和主链的运动用~（13）C和~（15）N-NMR研究链球菌蛋白G B1结构域的动力学松弛和旋转模型分析。GB 1只有56个氨基酸残基排列在折叠中，中心α-螺旋堆积在四股β折叠尽管它的体积很小，这些性质与在较大蛋白质中观察到的性质相似。GB 1贷款通过肽将其本身良好地选择性地富集到13/C/15/N各向同性富集合成和实验研究使用NMR弛豫衍生自动和交叉肽合成和实验研究，使用NMR 关系衍生的自体肽和交叉肽合成，使用NMR关系导出的自相关和互相关光谱的研究用于分析所有主链和侧链N-H和C-H运动的密度向量。本项目的具体目标是：（1）确定内部所有侧链和骨架位置在未折叠状态下的运动 GB 1，（3）开发新的方法和运动模型来分析这些核磁共振弛豫数据大多数NMR动力学研究报告的数据，而定性信息，仅限于自相关参数的分析 [通常来自残基中的单个运动矢量，即，主链15/N-H 或13/C/α-H]。这笔赠款与以前的研究不同的是，它将使用自动和来自所有可用运动矢量（主干）的互相关参数和侧链）以及各种旋转模型和无模型方法，对蛋白质的运动动力学提供了更详细的描述。偶极和偶极-CSA互相关谱密度，T/1，T/1 p，将确定至少两个频率下的T/2和杂波NOE。对于主链运动，13/C/α/H、13/CO和15/NH弛豫速率将测量，而对于侧链运动，13 CH n自动和交叉相关性将提供唯一的运动信息。