Spectroelectrochemistry of Flavo and Metalloproteins

蛋白质伙伴（如底物、产物、其他蛋白质和小效应分子）之间的电子转移是许多重要生物过程的关键组成部分。动力学和热力学研究表明，许多酶的电子转移（以及它们的整体反应机制）是由蛋白质伴侣的结合调节的。在b-氧化过程中起主要作用的酰基辅酶a脱氢酶（ACDs）和为DNA合成提供脱氧核苷酸的核糖核苷酸还原酶（RNR）都参与了由蛋白质伴侣结合高度调节的电子转移。它们的非共价结合蛋白辅助因子（分别为黄素和双铁中心）的氧化还原特性被发现是与调节相关的热力学变化的极好指标，因为底物/产物结合会干扰这些报告基团的中点电位。因此，光谱电化学通常可以识别用任何其他方法无法观察到的变化。本提案的目的是进一步了解蛋白质伴侣结合中导致ACDs和RNR催化调节的相互作用。对于ACD，我们的目标是了解配体结合诱导的相互作用如何影响催化作用以及ACD和配体的热力学性质。大量的热力学数据表明，ACDs是高度调控的。最近的拉曼光谱和氧化还原研究使用相同的拉曼活性产物类似物，使我们假设底物结合导致酶(E)的氧化还原电位发生变化，反过来，与酶的结合导致底物(S)在活性位点极化，证明活性配合物的性质[E]。S]与游离E和S不同。为了更多地了解活化络合物[E。S]，我们设计了一系列新的底物类似物来探测该物种，进一步探索底物极化和氧化还原化学的变化。对于RNR，我们建议探索负责亚基之间远程电子转移门控的相互作用。铁中心的氧化还原电位研究提供了表明R1结合影响R2的唯一数据。R2铁中心作为构象变化和/或由[R1]形成的远程相互作用的报告基团。R2]复合物，我们期望观察到底物、生成物和变构效应物结合引起的其他变化。

Electron transfer between protein partners (e.g., substrates, products, other proteins, and small effector molecules) is a key component of many important biological processes. Kinetic and thermodynamic studies suggest that the electron transfer of many enzymes (and thus their overall reaction mechanisms) is regulated by the binding of protein partners. The acyl-CoA dehydrogenases (ACDs) that play a major role in b-oxidation, and ribonucleotide reductase (RNR), which provides deoxynucleotides for DNA synthesis, are both involved in electron transfers that are highly regulated by protein partner binding. The redox properties of their noncovalently-bound protein cofactors (flavins and diiron centers, respectively) have been found to be excellent indicators of the thermodynamic changes linked to regulation, since substrate/product binding perturbs the midpoint potentials of these reporter groups. Thus, spectroelectrochemistry can often identify changes that cannot be observed by any other means. The objective of this proposal is to gain additional insight into the interactions involved in protein partner binding that result in the catalytic regulation of the ACDs and RNR. For the ACDs, our goal is to learn how the interactions induced by ligand binding affect catalysis and the thermodynamic properties of both the ACD and the ligand. A wealth of thermodynamic data show that the ACDs are highly regulated. Recent Raman spectroscopic and redox studies using the same Raman active product analog have led us to hypothesize that substrate binding causes the redox potential of the enzyme (E) to change, and that in turn, binding to the enzyme causes the substrate (S) to be polarized in the active site, demonstrating that the properties of the activated complex [E.S] are different from those of the free E and S. In order to learn more about the activated complex [E.S], we have devised a new series of substrate analogs to probe that species, further exploring substrate polarization and changes in redox chemistry. For RNR, we propose to probe the interactions responsible for the gating of the long-range electron transfer between subunits. Redox potential studies of the iron center have provided the only data indicating that R1 binding affects R2. The R2 iron center acts as a reporter group for conformational changes and/or long- range interactions that result from the formation of the [R1.R2] complex, and we expect to observe additional changes caused by the binding of substrate, product, and allosteric effectors.