Functional Analysis of LEM-domain Nuclear Proteins

LEM 结构域核蛋白的功能分析

• 批准号: 6744375
• 负责人: Katherine L Wilson
• 金额: $ 26.79万
• 依托单位: JOHNS HOPKINS UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2002
• 资助国家: 美国
• 起止时间: 2002-05-01 至 2006-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6744375
• 关键词: Caenorhabditis elegans; DNA binding protein; RNA interference; cell nucleus; chromatin; developmental genetics; gene expression; growth /development; immunologic assay /test; intermolecular interaction; invertebrate embryology; laboratory rabbit; laboratory rat; lamins; lethal genes; membrane proteins; molecular cloning; molecular site; morphometry; nucleic acid metabolism; nucleoproteins; polymerase chain reaction; protein localization; protein structure function; reporter genes; site directed mutagenesis; yeast two hybrid system

Emerin is a nuclear membrane protein that bines lamina filaments. Emerin mutations cause Emery-Dreifuss muscular dystrophy, affecting heart, skeletal muscle, and tendons. Emerin belongs to the conserved LEM-domain family of nuclear proteins. The LEM-domain of emerin binds BAF (barrier to autointegration factor), a conserved chromatin protein of unknown function. We propose that LEM proteins structurally link chromatin (via BAF) to the lamina, and also bind partners that mediate DNA replication or transcriptional repression. We propose to determine the essential function of three conserved LEM proteins in C.elegans: emerin, MAN1 and lem-3. In C. elelgans, all or most cells express emerin and MAN1, but the RNAi-induced loss of emerin or MAN1 has no phenotype. However, loss of both proteins is lethal in embryos. Thus, emerin and MAN1 have essential function(s). We will test the hypothesis that all three LEM proteins bind directly to BAF and lamin, and use site-directed mutagenesis to map their binding regions. We will use RNAi to deplete each LEM protein, and pairs of LEM proteins to test for overlapping and cell-type-specific functions in vivo. By identifying and characterizing new binding partners for emerin, MAN1 and lem- 3, we will test our hypothesis that LEM proteins are directly involved in replication, transcription, or lamin dynamics. We will determine if mutant LEM proteins, whose binding activities are defined in vitro, can rescue lethality of emerin: MAN1 (RNAi) embryos. WE will screen for mutations that are synthetically lethal in an emerin null or MAN1 null background, to identify proteins that mediate the essential functions of emerin and MAN1. This work will be the first genetic analysis of the nuclear lamina. Our work will yield basic knowledge about the functions of LEM proteins, and their interactions with lamins and BAF. This work can be extended to humans to predict the molecular mechanisms of heart disease and muscular dystrophy caused by loss of emerin.

Emerin是一种核膜蛋白，它使叶片丝弯曲。 Emerin突变导致Emery-Dreifuss肌营养不良症，影响心脏，骨骼肌和肌腱。 Emerin属于保守的核蛋白LEM结构域家族。 Emerin的LEM结构域结合BAF（自整合屏障因子），BAF是一种功能未知的保守染色质蛋白。 我们建议LEM蛋白在结构上将染色质（通过BAF）连接到纤层，并且还结合介导DNA复制或转录抑制的伴侣。 我们建议确定三个保守的LEM蛋白的基本功能在线虫：emerin，MAN 1和lem-3。 In C.在elegans中，所有或大多数细胞表达emerin和MAN 1，但RNAi诱导的emerin或MAN 1的丢失没有表型。 然而，这两种蛋白质的丢失在胚胎中是致命的。因此，Emerin和MAN 1具有基本功能。 我们将测试的假设，所有三个LEM蛋白直接结合BAF和核纤层蛋白，并使用定点诱变映射其结合区域。 我们将使用RNAi来消除每个LEM蛋白，并对LEM蛋白进行体内重叠和细胞类型特异性功能测试。 通过识别和表征新的结合伙伴emerin，MAN 1和lem- 3，我们将测试我们的假设，即LEM蛋白直接参与复制，转录，或核纤层蛋白动力学。 我们将确定是否突变LEM蛋白，其结合活性在体外定义，可以挽救emerin：MAN 1（RNAi）胚胎的致命性。 我们将筛选在emerin null或MAN 1 null背景下合成致死的突变，以鉴定介导emerin和MAN 1基本功能的蛋白质。 这项工作将是第一个核纤层的遗传分析。 我们的工作将产生关于LEM蛋白的功能的基本知识，以及它们与核纤层蛋白和BAF的相互作用。 这项工作可以扩展到人类，以预测由emerin丢失引起的心脏病和肌肉萎缩症的分子机制。