DYNAMICS AND FUNCTION OF G4 DNA

G4 DNA 的动力学和功能

• 批准号: 7097310
• 负责人: Nancy Maizels
• 金额: $ 28.5万
• 依托单位: UNIVERSITY OF WASHINGTON
• 依托单位国家: 美国
• 财政年份: 2002
• 资助国家: 美国
• 起止时间: 2002-08-01 至 2008-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7097310
• 关键词: DNA; DNA repair; DNA replication; Escherichia coli; Saccharomyces cerevisiae; chromatin immunoprecipitation; enzyme activity; fungal genetics; fungal proteins; gene mutation; genetic transcription; guanine; helicase; intermolecular interaction; molecular shape; nucleic acid repetitive sequence; nucleic acid structure; polymerase chain reaction; protein metabolism; protein structure function; protein transport; protooncogene; ribosomal DNA; ribosomal RNA; two dimensional gel electrophoresis

DESCRIPTION (provided by applicant): G-rich DNA can form structures stabilized by interactions between guanines, referred to as G4 DNA. These structures have been widely studied in vitro, but until recently had not been shown to form in vivo. My laboratory has very recently directly identified G4 DNA formed in vivo. Building upon and extending this result, we now propose to study in detail how G4 DNA forms, how it is eliminated from living cells, and whether G4 DNA contributes to genomic instability. To that end we will pursue the following specific aims: (1) We will ask if G4 DNA forms at two G-rich genes, c-myc and the rDNA repeats; (2) we will ask whether G4 DNA formation contributes to genomic instability in yeast; (3) we will study instability of G-rich repeats in human cells, and the functions of BLM helicase in their maintenance; (4) we will identify the conserved motif(s) within RecQ family helicases that specify G4 DNA interaction, and create the corresponding mutants to study functions of enzymes in this family in vivo;, and (5) we will ask how mismatch repair factors participate in elimination of G4 DNA. Results from experiments in this proposal will extend our understanding of G4 DNA formation in living cells, characterize pathways that promote its elimination, and establish its contribution to genomic instability that leads to genetic disease and development of malignancy.

描述（由申请人提供）：富含G的DNA可以形成通过鸟嘌呤之间的相互作用而稳定的结构，称为G4 DNA。这些结构已经在体外进行了广泛的研究，但直到最近才显示出在体内形成。我的实验室最近直接鉴定了体内形成的G4 DNA。基于并扩展这一结果，我们现在建议详细研究G4 DNA是如何形成的，它是如何从活细胞中消除的，以及G4 DNA是否有助于基因组不稳定性。为此，我们将追求以下具体目标：（1）我们将询问G4 DNA是否在两个富含G的基因，c-myc和rDNA重复序列上形成;（2）我们将询问G4 DNA的形成是否有助于酵母基因组的不稳定性;（3）我们将研究人类细胞中富含G的重复序列的不稳定性，以及BLM解旋酶在其维持中的功能;（4）我们将鉴定RecQ家族解旋酶中指定G4 DNA相互作用的保守基序，并创建相应的突变体以研究该家族中酶的体内功能;（5）我们将询问错配修复因子如何参与G4 DNA的消除。本提案中的实验结果将扩展我们对活细胞中G4 DNA形成的理解，表征促进其消除的途径，并确定其对导致遗传疾病和恶性肿瘤发展的基因组不稳定性的贡献。