Conformational Dynamics of Protein Tyrosine Kinases Src and Abl

蛋白酪氨酸激酶 Src 和 Abl 的构象动力学

• 批准号: 7319435
• 负责人: Markus A Seeliger
• 金额: $ 7.98万
• 依托单位: UNIVERSITY OF CALIFORNIA BERKELEY
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-07-15 至 2009-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7319435
• 关键词: ABL1 gene; Affinity; Amino Acids; Arts; Binding; Cancer Patient; Cell division; Characteristics; Chimeric Proteins; Chronic; Chronic Myeloid Leukemia; Collaborations; Complex; Condition; Data; Depth; Disease; Drug Delivery Systems; Drug Interactions; Drug Regulations; Drug resistance; Energy Metabolism; Event; Gleevec; Goals; Heteronuclear NMR; Imatinib; Link; Maps; Measures; Mediating; Methodology; Molecular Conformation; Motion; Movement; Mutation; Myeloid Leukemia; Nitrogen; Nuclear Magnetic Resonance; Patients; Peptides; Pharmaceutical Preparations; Phosphotransferases; Population; Preparation; Process; Protein Dynamics; Protein Kinase; Protein Region; Proteins; Proto-Oncogenes; Range; Rate; Regulation; Relative (related person); Research; Research Personnel; Resistance; Resolution; Roentgen Rays; Role; Sampling; Signal Transduction; Specificity; Structure; System; Therapeutic; Time; Time Study; Vertebral column; base; c-abl Proto-Oncogenes; drug sensitivity; inhibitor/antagonist; instrumentation; interest; leukemia; millisecond; nanosecond; programs; protein-tyrosine kinase c-src; research study; src-Family Kinases

DESCRIPTION (provided by applicant): Protein kinases mediate many cell signaling events, and their tight control is essential for regulating essential processes ranging from cell division to energy metabolism. Thus, it is not surprising that protein kinases are directly or indirectly involved in many diseases and that kinases are key drug targets. For example, Src kinase was the first identified proto-oncogene and the formation of a de-regulated Abl fusion protein (BCR-Abl) is the cause of disease in 95% of patients with chronic myeloid leukemia. X-ray crystal structures have shown that the same kinases can obtain an active and various inactive conformations, implying that kinases are inherently flexible. How the active and inactive states are stabilized and how the states interconvert are key questions in understanding kinase regulation. Because X-ray crystal structures provide only static snapshots, we will use nuclear magnetic resonance (NMR) experiments to study the time scales and amplitudes of structural interconversions in Abl and Src kinase domains. BCR-Abl is the target of the clinically highly successful drug imatinib (Gleevec(r), Novartis) in the treatment of chronic myelogenous leukemia (CML). Why does imatinib bind and inhibit c-Abl but not the structurally closely related c-Src kinase? The crystal structure of Src in complex with imatinib shows protein-drug interactions similar to that of Abl, even though the affinity of imatinib for Src is orders of magnitude lower than for Abl. Because imatinib binds only to the inactive conformation of the kinase, drug binding is intimately related to the interconversion between active and inactive states. The goal of this study is to examine whether differences in this interconversion underlie the differential sensitivities for imatinib. Therefore, we will compare the time scales and amplitudes of backbone motions between Src and Abl kinases in the presence of imatinib by NMR experiments. In preparation for these dynamics experiments, we have established expression systems and NMR conditions and will next pursue the assignment of the Src and Abl NMR spectra. Kinase inhibitory drugs such as imatinib have a great therapeutic potential because of the many signaling events that protein kinases mediate. However, these drugs have to be exceptionally specific for their target kinase and resistance mutations can render these drugs ineffective as seen in leukemia patients under imatinib treatment. The proposed experiments will clarify how inhibitors such as imatinib exploit the characteristic movements of kinase proteins, rather than just their structures, to achieve specificity. Furthermore, the results will have broader impact on the understanding of the fundamental mechanisms of kinase regulation and of drug resistance mutations that are known to arise in cancer patients undergoing kinase inhibitory treatment.

描述（由申请人提供）：蛋白激酶介导许多细胞信号传导事件，其严格控制对于调节从细胞分裂到能量代谢的基本过程至关重要。因此，蛋白激酶直接或间接参与许多疾病并且激酶是关键的药物靶标也就不足为奇了。例如，Src 激酶是第一个被识别的原癌基因，而失调的 Abl 融合蛋白 (BCR-Abl) 的形成是 95% 的慢性粒细胞白血病患者患病的原因。 X射线晶体结构表明，相同的激酶可以获得活性和各种非活性构象，这意味着激酶本质上是灵活的。活性和非活性状态如何稳定以及状态如何相互转换是理解激酶调节的关键问题。由于 X 射线晶体结构仅提供静态快照，因此我们将使用核磁共振 (NMR) 实验来研究 Abl 和 Src 激酶结构域中结构互变的时间尺度和幅度。 BCR-Abl 是临床上非常成功的药物伊马替尼（Gleevec(r)，诺华）治疗慢性粒细胞白血病（CML）的靶点。为什么伊马替尼能结合并抑制 c-Abl，而不是结构上密切相关的 c-Src 激酶？ Src 与伊马替尼复合物的晶体结构显示出与 Abl 相似的蛋白质-药物相互作用，尽管伊马替尼对 Src 的亲和力比对 Abl 的亲和力低几个数量级。由于伊马替尼仅与激酶的非活性构象结合，因此药物结合与活性和非活性状态之间的相互转换密切相关。本研究的目的是检查这种相互转化的差异是否是伊马替尼差异敏感性的基础。因此，我们将通过 NMR 实验比较伊马替尼存在下 Src 和 Abl 激酶之间骨干运动的时间尺度和幅度。为了准备这些动力学实验，我们已经建立了表达系统和 NMR 条件，接下来将进行 Src 和 Abl NMR 谱的分配。 由于蛋白激酶介导的许多信号事件，伊马替尼等激酶抑制药物具有巨大的治疗潜力。然而，这些药物必须对其靶激酶具有特殊的特异性，而耐药性突变可能会使这些药物无效，正如接受伊马替尼治疗的白血病患者所见。拟议的实验将阐明伊马替尼等抑制剂如何利用激酶蛋白的特征运动（而不仅仅是其结构）来实现特异性。此外，这些结果将对了解激酶调节的基本机制和已知在接受激酶抑制治疗的癌症患者中出现的耐药突变产生更广泛的影响。