Developing and Using Sheepshead Minnow Microarrays for Ecotoxicology

开发和使用羊头鲦鱼微阵列进行生态毒理学

• 批准号: 7221072
• 负责人: BARBARA JOAN CARTER
• 金额: $ 37.44万
• 依托单位: ECOARRAY, INC.
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-09-24 至 2009-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7221072
• 关键词: Academia; Acute; Adverse effects; Affect; Animals; Area; Bass; Biological; Cadmium; Cadmium Compounds; Case Study; Chemicals; Chemistry; Class; Copper; Data; Data Analyses; Databases; Diagnosis; Dose; End Point; Environment; Environmental Monitoring; Environmental Pollution; Estrogens; Exposure to; Fertility; Fingerprint; Fishes; Fresh Water; Future; Gene Expression; Gene Expression Profile; Generations; Genes; Genetic; Goals; Gonadal structure; Government; Grant; Health; Hormones; Human; Individual; Insecticides; Knowledge; Laboratories; Lead; Link; Liver; Measurement; Measures; Mediating; Metals; Methods; Microarray Analysis; Minnows; Modeling; Molecular; Molecular Profiling; Monitor; Numbers; Organism; Pathway interactions; Pattern; Pharmacologic Substance; Phase; Physiological; Physiology; Poaceae; Pollution; Principal Investigator; Pyrenes; RNA; Research; Research Personnel; Risk; Risk Assessment; Sampling; Screening procedure; Sentinel; Sex Behavior; Shrimp; Signal Pathway; Site; Sodium Chloride; Solid; Spottings; Survival Rate; Testing; Toxicogenomics; United States Environmental Protection Agency; Validation; Water; anthropogenesis; aquatic organism; base; bisphenol A; commercialization; interest; mortality; new technology; pollutant; programs; pyrene; receptor; remediation; reproductive; research study; response; superfund site; tool; water quality; water testing

DESCRIPTION (provided by applicant): Microarrays are a powerful way to measure the impact of contaminants in the environment, and sheepshead minnows (Cyprinodon variegatus) are the most commonly used species in salt water environmental testing. In this proposal, we explain how we will develop and validate a large microarray (5,000+ genes) in sheepshead minnows. We will conduct a number of short and long term exposures on sheepshead minnows using several anthropogenic compounds (pyrene, copper, cadmium, and bisphenol A), then use the microarrays to measure the gene expression signatures for these compounds. This data, along with a variety of physiological endpoints, will be the basis for a relational database. We will analyze the data and decipher the patterns resulting from the various exposures to identify the unique fingerprints for each compound. Microarrays in sheepshead minnows will round out EcoArray's offering of microarrays for environmentally significant aquatic species. Measurement and analysis of environmental contaminants is very important to the EPA in its Superfund monitoring activities, and the sheepshead minnow is an important species that is routinely used for the monitoring of coastal superfund sites. In addition, diagnosis of ecotoxological effects at the gene level in sentinel species like sheepshead minnow offer the promise of future ability to tie ecotoxicology to human health, a goal of the National Center for Toxicogenomics. Experiments by our research group and others have shown that microarrays can be used to detect changes in gene expression caused by exposure to contaminants, and it is clear that contaminants have unique genetic signatures. Because many contaminants act at the gene level to induce or repress gene expression through both receptor-mediated and non-receptor mediated pathways, microarrays can help to elucidate signaling pathways that are affected. In general, microarrays offer a direct, effective way to provide detailed data about the biological effects of the environment on animals. In addition, analysis using microarrays is generally considerably less expensive than current testing methods. With the successful completion of this grant, we will incorporate the sheepshead minnow microarray and its database into our existing product line and sell it to the EPA, USGS, researchers in academia, as well as industrial concerns interested in compound screening and environmental monitoring/remediation. This project will result in a fully developed microarray for ecotoxicology testing in salt water. This microarray, together with the database this project will begin, can provide detailed, gene-level data on the biological impact of a chemical or an environment. In so doing, it can lead to assessment not only of water quality, but also of the implications of chemicals and environments for human health.

描述（由申请人提供）：微阵列是测量环境中污染物影响的一种有效方法，羊头鱼（Cyprinodon variegatus）是盐水环境测试中最常用的物种。在这个提议中，我们解释了我们将如何在羊头小鱼中开发和验证一个大型微阵列（5,000多个基因）。我们将使用几种人为化合物（芘，铜，镉和双酚A）对羊头鱼进行一些短期和长期暴露，然后使用微阵列来测量这些化合物的基因表达特征。这些数据，沿着各种生理终点，将成为关系数据库的基础。我们将分析数据并破译各种暴露所产生的模式，以确定每种化合物的独特指纹。羊头小鱼的微阵列将完善EcoArray为环境重要水生物种提供的微阵列。环境污染物的测量和分析是非常重要的EPA在其超级基金监测活动，和羊头小鱼是一个重要的物种，经常用于监测沿海超级基金网站。此外，在基因水平上诊断生态毒理学效应的哨兵物种，如羊头小鱼提供了未来的能力，以配合生态毒理学对人类健康的承诺，国家毒理基因组学中心的目标。我们研究小组和其他人的实验表明，微阵列可以用于检测暴露于污染物引起的基因表达变化，很明显，污染物具有独特的遗传特征。由于许多污染物在基因水平上通过受体介导和非受体介导的途径诱导或抑制基因表达，因此微阵列可以帮助阐明受影响的信号传导途径。总的来说，微阵列提供了一种直接有效的方法来提供有关环境对动物生物学效应的详细数据。此外，使用微阵列的分析通常比目前的测试方法便宜得多。随着这项资助的成功完成，我们将把羊头米诺鱼微阵列及其数据库纳入我们现有的产品线，并将其出售给美国环保署，美国地质调查局，学术界的研究人员，以及对化合物筛选和环境监测/修复感兴趣的工业企业。 该项目将导致一个完全开发的微阵列在盐水中的生态毒理学测试。这个微阵列，连同这个项目将开始的数据库，可以提供关于化学物质或环境的生物影响的详细的基因水平的数据。这样做不仅可以评估水质，而且可以评估化学品和环境对人类健康的影响。