Functional Dynamics and Molecular Mechanism of Photolayse

Photolayse的功能动力学和分子机制

• 批准号: 7343211
• 负责人: DONGPING ZHONG
• 金额: $ 28.5万
• 依托单位: OHIO STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-02-01 至 2012-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7343211
• 关键词: Active Sites; Arts; Biochemical; Catalytic Domain; Cells; Chemicals; Class; DNA; DNA Repair; DNA photoproducts; Drug Design; Environment; Escherichia coli; Evolution; Goals; Human; Human Cell Line; Lasers; Light; Methods; Molecular; Molecular Biology; Monitor; Mus; Organism; Pathway interactions; Play; Process; Pyrimidine; Pyrimidine Dimers; Pyrimidines; Reaction; Research; Resolution; Role; Series; Site-Directed Mutagenesis; Skin Cancer; Spectrum Analysis; System; Time; Ultraviolet Rays; Work; base; cofactor; computer studies; cytotoxic; dimer; gene therapy; irradiation; molecular dynamics; molecular modeling; quantum; repaired; research study; skin cancer prevention; sunlight-induced; tumorigenesis; ultraviolet; ultraviolet damage

DESCRIPTION (provided by applicant): Functional Dynamics and Molecular Mechanism of Photolyase Photolyase is a photoenzyme that uses the energy of blue light to reverse UV-induced DMA damage in many organisms. It is lacking in humans, but recent experiments in human cell lines and in mice indicate that through gene therapy, photolyase can be used to heighten resistence to sunlight-induced tumorigenesis. Cyclobutane pyrimidine dimer (CPD) and pyrimidine-pyrimidone (6-4) photoproduct are the two major classes of cytotoxic, mutagenic and carcinogenic DNA photoproducts produced by UV-light irradiation of cells and are the main cause of skin cancer. A hypothetical molecular model of DNA repair by photolyase has been proposed and investigated for a long time, but direct evidence for the catalytic pathway had never been observed until last year when we captured a catalytic intemediate using ultrafast spectroscopy. Understanding of the remarkably efficient repair mechanism at the atomic scale has been lacking. Thus, the first objective of the project is to reveal the molecular mechanism of dimer repair in DNA by CPD photolyase at the most fundamental level and determine the key factors for its high repair efficiency. The mechanism of the (6-4)-photoproduct repair by (6-4) photolyase has been less examined and the repair dynamics, less efficient than CPD photolyase, have never been explored. Therefore, the second objective is to characterize the repair dynamics of (6-4) photolyase, elucidate its molecular mechanism, and understand the factors contributing to its lessened efficiency compared to CPD photolyase. To achieve these goals, we integrate state-of-the-art femtosecond laser spectroscopy, molecular biology methods and computational studies, and break down the dynamic complexity of repair processes into elementary steps. With femtosecond temporal resolution and single-residue spatial resolution, we will unravel the complete evolution of the functional dynamics and lay bare the fundamental mechanisms of DNA repair by photolyase. The understanding gained from this work will help in rational drug design and gene therapy to prevent skin cancer induced by UV light.

描述（由申请人提供）：光裂酶的功能动力学和分子机制光裂酶是一种光酶，它利用蓝光的能量来逆转许多生物体中紫外线诱导的DMA损伤。人类缺乏这种酶，但最近在人类细胞系和小鼠身上的实验表明，通过基因治疗，光裂合酶可以用来提高对阳光诱导的肿瘤发生的抵抗力。环丁烷嘧啶二聚体（CPD）和嘧啶-嘧啶酮（6-4）光产物是紫外光照射细胞产生的两类主要的细胞毒性、致突变和致癌的DNA光产物，是皮肤癌的主要原因。一个假设的DNA修复的光解酶的分子模型已经提出和研究了很长一段时间，但催化途径的直接证据从来没有观察到，直到去年，当我们捕获了催化中间体使用超快光谱。在原子尺度上对非常有效的修复机制的理解一直缺乏。因此，该项目的第一个目标是在最基本的水平上揭示CPD光解酶修复DNA二聚体的分子机制，并确定其高修复效率的关键因素。（6 - 4）光裂合酶对（6 - 4）-光产物的修复机制研究较少，而修复动力学的效率低于CPD光裂合酶，从未被探索过。因此，第二个目标是表征（6-4）光裂合酶的修复动力学，阐明其分子机制，并了解导致其与CPD光裂合酶相比效率降低的因素。为了实现这些目标，我们整合了最先进的飞秒激光光谱，分子生物学方法和计算研究，并将修复过程的动态复杂性分解为基本步骤。通过飞秒时间分辨率和单残基空间分辨率，我们将揭示完整的功能动力学演化，并揭示光解酶修复DNA的基本机制。从这项工作中获得的理解将有助于合理的药物设计和基因治疗，以防止由紫外线引起的皮肤癌。