The Structure and Function of Perinucleolar Compartment

核仁周围室的结构和功能

• 批准号: 7846780
• 负责人: Sui HUANG
• 金额: $ 28.22万
• 依托单位: NORTHWESTERN UNIVERSITY AT CHICAGO
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-08-10 至 2012-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7846780
• 关键词: Address; Antibodies; Binding; Biological; Biological Assay; Cell Extracts; Cell Nucleolus; Cells; Complementary RNA; Complex; DNA Polymerase II; DNA Polymerase III; Functional RNA; Goals; Hela Cells; In Situ; In Vitro; Lead; Life; Life Cycle Stages; Malignant - descriptor; Malignant Neoplasms; Membrane; Metabolism; Modeling; Molecular; Normal Cell; Nuclear; Nucleoplasm; Polypyrimidine Tract-Binding Protein; Post-Transcriptional Regulation; Process; Protein Subunits; Proteins; Proteomics; RNA; RNA Processing; RNA-Binding Proteins; Regulation; Ribonucleases; Role; Solutions; Structure; Testing; Work; cDNA Library; in vivo; mRNA Precursor; novel; protein complex; protein profiling

DESCRIPTION (provided by applicant): Our long-term goal is to understand the structure and function of the PNC and its roles in malignancy. The perinucleolar compartment (PNC) is a multicomponent non-membrane bound nuclear substructure that localizes to the nucleolar periphery. We have found it to be unique to malignant transformation both in vitro and in vivo. The PNC is enriched with RNA newly synthesized by pol III and RNA binding proteins primarily implicated in pol II RNA processing. Our preliminary findings show that the PNC-associated RNAs are in the same complexes with some of the known pol II RNA binding proteins. These novel complexes are not restricted to the PNC since PTB-MRP RNA interactions can also be detected in normal cells without PNCs. However, the levels or the regulations of these complexes may change during malignancy, leading to the nucleation of these complexes in the PNC. These findings lead to our working model in which the PNC is associated with and may represent changes in novel molecular complexes that are involved in the metabolism of newly synthesized pol III RNA during malignancy. The goal of this proposal is to begin test this hypothesis by identifying and initially characterizing these novel RNPs, using RNase MRP RNA (one of the bona fide components of the PNC) as the first example, and by beginning to address the functional association of these RNPs with the PNC using cell biological approaches. As little is understood regarding the post-transcriptional processing and regulation of the pol III small non-coding RNAs, the solution of the novel RNPs is not only important for the understanding of PNC structure and function, but should also reveal a novel mechanism involved in the post-transcriptional regulation of these functional RNAs.

描述（由申请人提供）：我们的长期目标是了解PNC的结构和功能及其在恶性肿瘤中的作用。核仁周室（PNC）是位于核仁周边的多组分非膜结合核亚结构。我们已经发现它是唯一的恶性转化在体外和体内。PNC富含由pol III新合成的RNA和主要涉及pol II RNA加工的RNA结合蛋白。我们的初步研究结果表明，与PNC相关的RNA与一些已知的pol II RNA结合蛋白处于相同的复合物中。这些新的复合物不限于PNC，因为PTB-MRP RNA相互作用也可以在没有PNC的正常细胞中检测到。然而，这些复合物的水平或调节可能会在恶性肿瘤期间发生变化，导致这些复合物在PNC中成核。这些发现导致我们的工作模型，其中PNC与恶性肿瘤期间新合成的pol III RNA的代谢所涉及的新型分子复合物相关并可能代表其变化。本提案的目标是通过鉴定和初步表征这些新的RNP来开始测试这一假设，使用RNase MRP RNA（PNC的真正组分之一）作为第一个例子，并通过使用细胞生物学方法开始解决这些RNP与PNC的功能关联。由于对pol III小的非编码RNA的转录后加工和调控知之甚少，新的RNP的解决方案不仅对理解PNC结构和功能很重要，而且还应该揭示参与这些功能RNA的转录后调控的新机制。