A lifetime of attrition: post-genomic analyses of ecological and evolutionary processes in nematode - vertebrate systems.

一生的消耗：线虫-脊椎动物系统生态和进化过程的后基因组分析。

• 批准号: NE/D000602/1
• 负责人: Steve Paterson
• 金额: $ 49.28万
• 依托单位: University of Liverpool
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2006
• 资助国家: 英国
• 起止时间: 2006 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=NE%2FD000602%2F1
• 关键词: lifetime; attrition; post; genomic; analyses

Virtually every species of terrestrial, freshwater and marine vertebrate is parasitized by nematodes (roundworms). Nematode infections exhibit persistent infection and re-infection throughout the life of a host, with strong sex, age and season effects on intensities of infection. These parasites therefore constitute an important component of the environment of vertebrates and affect the fitness of individuals and the dynamics of populations. There is now a timely opportunity to apply new methods from genomics to explore the ecological and evolutionary consequences of vertebrate-nematode interactions in the natural environment. Such work holds great promise but extending genomics from the bench-top to natural populations also presents significant challenges. In particular, the variation between individuals that makes research in natural populations so important also makes it difficult to apply some genomics methods, such as high throughput gene expression (microarray) analyses. Our response to these challenges is to build a consortium based around three well-characterised vertebrate - nematode systems, the Soay sheep and Teladorsagia circumcincta, the red grouse and Trichostrongylus tenuis and the brown rat and Strongyloides ratti. We will use a series of approaches ranging from microarray studies within laboratory experiments that mimic the wild situation, through to microarray studies on individuals living in wild populations subject to experimental manipulations. As a result, we hope to learn from each other, and demonstrate to the research community, just how far these new methodologies can be applied to natural populations in situ. In the process, we expect to generate a trained group of workers with the skills to develop the field more widely in the UK. Work within the consortium will explore a set of related questions that, in combination, allow us to address two broad objectives that are crucial to advancing our understanding of host-parasite ecology and evolution: (1) To dissect and quantify the link between the genetic basis of host-parasite interactions and the population biology of hosts and parasites. Infection is a process that acts on individuals but impacts on the dynamics of populations; through the effects of infection on the growth, survival and reproduction of individuals. Equally, the density of a population will impact on the level of competition between individuals for food or mates and consequently on the condition of individuals and their susceptibility to infection. The key challenge now is to understand how individual processes of infection influence, and are influenced by, the population biology of hosts and parasites. (2) To examine the origins and maintenance of genetic diversity in host and parasite populations. Within a population, individual hosts exhibit genetic differences in their susceptibility to infection. Equally, populations of parasitic nematodes are genetically variable with consequences for the persistence and transmission of infection. The key challenges to be addressed now are to identify regions of vertebrate and nematode genomes where genetic diversity is maintained through the continued interaction between both antagonists, the consequences of this genetic diversity and the selective processes by which this diversity is maintained.

事实上，陆地、淡水和海洋脊椎动物的每一种都被线虫(蛔虫)寄生。线虫感染表现为在宿主的一生中持续感染和再次感染，性别、年龄和季节对感染强度有很强的影响。因此，这些寄生虫构成了脊椎动物环境的重要组成部分，并影响到个体的适应性和种群的动态。现在有一个及时的机会，可以应用基因组学的新方法来探索自然环境中脊椎动物和线虫相互作用的生态和进化后果。这样的工作前景光明，但将基因组学从桌面扩展到自然种群也面临着巨大的挑战。特别是，个体之间的差异使得在自然种群中的研究变得如此重要，也使得一些基因组学方法的应用变得困难，例如高通量基因表达(微阵列)分析。我们对这些挑战的回应是，围绕三个特征良好的脊椎动物-线虫系统建立一个联盟，这三个系统是Soay绵羊和Teladorsagia eccincta，红松鸡和细小毛虫，以及棕色老鼠和Strongylodes Ratti。我们将使用一系列方法，从模拟野生环境的实验室实验中的微阵列研究，到对生活在受实验操作的野生种群中的个体的微阵列研究。因此，我们希望相互学习，并向研究界展示，这些新方法可以在多大程度上应用于原地自然种群。在这一过程中，我们希望培养出一批训练有素的工人，他们拥有在英国更广泛地开发该领域的技能。该联盟的工作将探索一系列相关的问题，这些问题结合在一起，使我们能够解决两个广泛的目标，这两个目标对于促进我们对宿主-寄生虫生态和进化的理解至关重要：(1)剖析和量化宿主-寄生虫相互作用的遗传基础与宿主和寄生虫的种群生物学之间的联系。感染是一个作用于个人但影响人口动态的过程；通过感染对个人的生长、生存和生殖的影响。同样，种群的密度将影响个体之间对食物或配偶的竞争程度，从而影响个体的状况及其感染的敏感性。现在的关键挑战是了解个体感染过程如何影响宿主和寄生虫的种群生物学，并受到其影响。(2)研究寄主和寄生虫种群遗传多样性的起源和维持。在一个种群内，个体宿主对感染的易感性表现出遗传差异。同样，寄生线虫的种群在遗传上是可变的，会对感染的持久性和传播产生影响。目前需要解决的关键挑战是确定脊椎动物和线虫基因组的区域，在这些区域中，通过两个拮抗剂之间的持续相互作用来维持遗传多样性，这种遗传多样性的后果以及维持这种多样性的选择性过程。

项目成果

Insights into population ecology from long-term studies of red grouse Lagopus lagopus scoticus.

从红松鸡 Lagopus lagopus scoticus 的长期研究中洞察种群生态学。

• DOI: 10.1111/1365-2656.12098
• 发表时间: 2014
• 期刊: The Journal of animal ecology
• 作者: Martínez-Padilla J

Identification of novel aspartic proteases from Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and molecular structure.

• DOI: 10.1186/1471-2164-10-611
• 发表时间: 2009-12-16
• 期刊: BMC genomics
• 影响因子: 4.4
• 作者: Mello LV;O'Meara H;Rigden DJ;Paterson S
• 通讯作者: Paterson S