NMR REFINEMENT
NMR REFINEMENT
批准号:
7957345
负责人:
CHARLES L BROOKS
金额:
$2.74万
依托单位国家:
美国
项目类别:
财政年份:
2009
资助国家:
美国
项目状态:
已结题
起止时间:
2009-09-01 至 2010-08-31
关键词:
Computer Retrieval of Information on Scientific Projects DatabaseElectrostaticsFundingGrantHydrogen BondingInstitutionLeadLightModelingPatternProteinsResearchResearch PersonnelResourcesScreening procedureSimulateSolventsSourceStagingStructureUnited States National Institutes of HealthVertebral columnmulti-scale modelingrestraintstructural biologytool
中文摘要
这个子项目是许多研究子项目中的一个
由NIH/NCRR资助的中心赠款提供的资源。子项目及
研究者(PI)可能从另一个NIH来源获得了主要资金,
因此可以在其他CRISP条目中表示。所列机构为
研究中心,而研究中心不一定是研究者所在的机构。
在NMR结构计算的能量函数中,静电相互作用经常被过度简化或忽略,因为如果没有适当描述溶剂的介电屏蔽,就很难可靠地评估它们。在最近的改进隐式溶剂模型,它表明,模拟退火细化在GB隐式溶剂中可能会导致显着的改善,在最终的蛋白质NMR结构的骨架二面角分布和氢键模式。然而,当存在足够数量的实验约束时(例如在NMR结构测定的最后阶段),隐式溶剂的影响相当小。
英文摘要
This subproject is one of many research subprojects utilizing the
resources provided by a Center grant funded by NIH/NCRR. The subproject and
investigator (PI) may have received primary funding from another NIH source,
and thus could be represented in other CRISP entries. The institution listed is
for the Center, which is not necessarily the institution for the investigator.
Electrostatic interactions are often oversimplified or ignored in the energy functions for NMR structure calculations, because it is difficult to evaluate them reliably without proper description of the dielectric screening by solvent. In light of recent improvements in implicit solvent models, it was showed that simulated annealing refinement in a GB implicit solvent could lead to noticeable improvement in the final protein NMR structures in terms of the backbone dihedral angle distributions and hydrogen bond patterns. However, the impact of implicit solvent is rather small when a sufficient number of experimental restraints exist (such as in the final stage of NMR structure determination).
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Theory and Modeling of Biomolecules and their Interactions - Equipment Supplement
-
批准号:9894101
-
项目类别:
-
资助金额:$16.5万
-
财政年份:2019
-
负责人:CHARLES L BROOKS
-
依托单位:
Theory and Modeling of Biomolecules and their Interactions
-
批准号:10094219
-
项目类别:
-
资助金额:$83.16万
-
财政年份:2019
-
负责人:CHARLES L BROOKS
-
依托单位:
Theory and Modeling of Biomolecules and their Interactions - Equipment Supplement
-
批准号:10580491
-
项目类别:
-
资助金额:$22.1万
-
财政年份:2019
-
负责人:CHARLES L BROOKS
-
依托单位:
Theory and Modeling of Biomolecules and their Interactions
-
批准号:10554419
-
项目类别:
-
资助金额:$83.16万
-
财政年份:2019
-
负责人:CHARLES L BROOKS
-
依托单位:
Theory and Modeling of Biomolecules and their Interactions
-
批准号:10333335
-
项目类别:
-
资助金额:$83.16万
-
财政年份:2019
-
负责人:CHARLES L BROOKS
-
依托单位:
Acid-mediated processes in nucleic acids and proteins
-
批准号:8854117
-
项目类别:
-
资助金额:$28.52万
-
财政年份:2014
-
负责人:CHARLES L BROOKS
-
依托单位:
Acid-mediated processes in nucleic acids and proteins
-
批准号:8691310
-
项目类别:
-
资助金额:$28.63万
-
财政年份:2014
-
负责人:CHARLES L BROOKS
-
依托单位:
Acid-mediated processes in nucleic acids and proteins
-
批准号:9068970
-
项目类别:
-
资助金额:$28.49万
-
财政年份:2014
-
负责人:CHARLES L BROOKS
-
依托单位:
Acid-mediated processes in nucleic acids and proteins
-
批准号:9294086
-
项目类别:
-
资助金额:$28.46万
-
财政年份:2014
-
负责人:CHARLES L BROOKS
-
依托单位:
CORE 2006-2011: COMPUTATIONAL IMPLEMENTATION OF A TIME CORRELATION FUNCTION THE
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批准号:8364273
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项目类别:
-
资助金额:$13.2万
-
财政年份:2011
-
负责人:CHARLES L BROOKS
-
依托单位:
CORE RESEARCH GRANT
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批准号:8364378
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:CHARLES L BROOKS
-
依托单位:
CHARMM MAINTENANCE ACCOUNT
-
批准号:8171959
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2010
-
负责人:CHARLES L BROOKS
-
依托单位:
CORE RESEARCH GRANT
-
批准号:8171941
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2010
-
负责人:CHARLES L BROOKS
-
依托单位:
CORE 2006-2011: COMPUTATIONAL IMPLEMENTATION OF A TIME CORRELATION FUNCTION THE
-
批准号:8171852
-
项目类别:
-
资助金额:$22.52万
-
财政年份:2010
-
负责人:CHARLES L BROOKS
-
依托单位:
VIRUS SWELLING AND MATURATION DYNAMICS
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批准号:7957332
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项目类别:
-
资助金额:$0.46万
-
财政年份:2009
-
负责人:CHARLES L BROOKS
-
依托单位:
HIGH-RESOLUTION REFINEMENT OF PROTEIN STRUCTURE FRO NMR CHEMICAL SHIFTS
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批准号:7957350
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项目类别:
-
资助金额:$5.94万
-
财政年份:2009
-
负责人:CHARLES L BROOKS
-
依托单位:
CHARMM MAINTENANCE ACCOUNT
-
批准号:7956134
-
项目类别:
-
资助金额:$0.08万
-
财政年份:2009
-
负责人:CHARLES L BROOKS
-
依托单位:
PROTEIN MODELING & STRUCTURAL GENOMICS
-
批准号:7957339
-
项目类别:
-
资助金额:$2.74万
-
财政年份:2009
-
负责人:CHARLES L BROOKS
-
依托单位:
CORE RESEARCH GRANT
-
批准号:7956064
-
项目类别:
-
资助金额:$0.08万
-
财政年份:2009
-
负责人:CHARLES L BROOKS
-
依托单位:
SOFTWARE DVMT, DOCUMENT & DISSEM WEB PAGES OF INFO ON MULTI SCALE MODELING TOOLS
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批准号:7957340
-
项目类别:
-
资助金额:$13.71万
-
财政年份:2009
-
负责人:CHARLES L BROOKS
-
依托单位:
海外基金