Breaking boundaries: quantifying the influence of demography and seascape in driving adaptive variation in the ubiquitous protist Oxyrrhis marina.

打破界限：量化人口统计和海景对驱动无处不在的原生生物 Oxyrris 码头适应性变化的影响。

• 批准号: NE/F005237/1
• 负责人: Phillip Watts
• 金额: $ 52.02万
• 依托单位: University of Liverpool
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2008
• 资助国家: 英国
• 起止时间: 2008 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=NE%2FF005237%2F1
• 关键词: Breaking; boundaries; quantifying; influence; demography

Biodiversity at all hierarchical levels, from communities to species and populations to genes, is critical for ecosystem health. It is essential, therefore, to provide a robust framework to understand mechanisms that promote or constrain adaptive divergence and potential response to new environments. A first step is to assess these processes within species. We will do this by employing an interdisciplinary approach that provides a unique examination of the interplay between landscape and key demographic parameters that drive adaptive divergence. Two key processes determine adaptive divergence: gene flow (gene movement by dispersing individuals) and effective population size (ie only those individuals that contribute genes to the next generation). High gene flow is a cohesive evolutionary force that limits genetic differentiation, thus restricting opportunity for ecological specialisation and ultimately speciation. Conversely, many species are locally adapted as a result of low gene flow, sometimes due to large geographic distances, but often because populations are distributed throughout heterogeneous landscapes with specific barriers, not distance per se, limiting movement. Genetic divergence is promoted also by small effective population size, but this process may be non-adaptive as under such circumstances random processes rather than natural selection shapes genome structure. Our study is designed specifically to resolve two broad questions: 1) how much adaptive divergence occurs between populations? 2) how do the demographic parameters, gene flow and effective population size, promote or constrain divergence? It is easy to visualise that in patchy terrestrial and freshwater systems demographic parameters (dispersal, effective population size), are intimately linked with the landscape matrix. However, this is less obvious for marine pelagic environments, which are traditionally viewed as 'open systems' with few barriers to gene flow. This view is now challenged, particularly by emerging research into the marine landscape (seascape) that recognises oceanographic features limit dispersal of metazoans. In contrast, small planktonic organisms, such as protists (single-celled eukaryotes), are speculated to be ubiquitously dispersed as they can be readily transported by wind and water currents. The corollary is that adaptive divergence of protist populations will be limited, in contrast to that described for metazoans; this presents an apparent paradox given the large taxonomic and functional diversity exhibited by protists, implying that either gene flow is limited or strong environmental pressures (eg temperature, salinity) drive adaptation. This issue requires addressing as protists are ecologically important and understanding the extent of ecological specialisation is critical to predict response to environment change. Specifically, we address this issue by applying experimental and molecular techniques to a protist model to resolve four questions: 1) where are protist population boundaries? 2) what are the values of gene flow and effective population sizes? 3) how do populations respond to key environmental variables in the marine system: temperature & salinity? and 4) are metazoans and protists similarly influenced by seascape? It is essential to simultaneously address these questions to truly understand the interplay between gene flow, effective population size and seascape. Our answers promise to offer fundamental insights into dispersal and adaptation of plankton, potentially guiding management of marine resources as plankton can have beneficial (eg influencing food web carbon flux) and harmful (eg toxic blooms) influences on ecosystem health. These data also have a major bearing on wider issues, by determining 1) the extent to which adaptive divergence occurs despite, or in the absence of, high gene flow and 2) whether there are fundamental differences between protist and metazoan evolutionary processes.

从社区到种群到基因的所有分层的生物多样性对于生态系统健康至关重要。因此，必须提供一个强大的框架来了解促进或限制适应性差异和对新环境的潜在反应的机制。第一步是评估物种内的这些过程。我们将采用一种跨学科方法来做到这一点，该方法对驱动自适应差异的景观和关键人口参数之间的相互作用进行了独特的检查。两个关键过程决定了适应性差异：基因流（通过分散个体而基因运动）和有效的种群大小（即只有那些为下一代贡献基因的个体）。高基因流是限制遗传分化的凝聚力进化力，因此限制了生态专业化和最终物种形成的机会。相反，许多物种是由于基因流量低而在局部适应的，有时是由于地理距离较大，但通常是因为种群分布在整个异质景观中，具有特定的障碍，而不是距离本身，而不是限制运动。遗传差异也是通过较小的有效人群规模来促进的，但是在这种情况下，这种过程可能是非自适应的，而不是随机过程而不是自然选择形状的基因组结构。我们的研究专门为解决两个广泛的问题而设计：1）种群之间发生了多少适应性差异？ 2）人口参数，基因流量和有效的人口规模如何促进或限制差异？很容易看到，在斑点的陆地和淡水系统中，人口统计参数（分散，有效的人口规模）与景观矩阵紧密相关。但是，对于海洋上层环境而言，这不太明显，传统上被视为“开放系统”，几乎没有基因流动的障碍。现在挑战了这种观点，特别是通过对海洋景观（海洋景观）的新研究，该研究认识到海洋特征限制了后生动物的散布。相比之下，据推测，小浮游生物（例如原生生物（单细胞真核生物））被普遍存在分散，因为它们很容易被风和水流运输。推论是，与对后生动物描述的相比，原生群体的自适应差异将受到限制。鉴于生物学家表现出较大的分类学和功能多样性，这表明了明显的悖论，这意味着基因流量有限或强烈的环境压力（例如温度，盐度）驱动适应。这个问题需要解决，因为生物在生态上很重要，并且了解生态专业的程度对于预测对环境变化的反应至关重要。具体而言，我们通过将实验和分子技术应用于原生物模型来解决四个问题：1）在哪里？ 2）基因流量和有效人口规模的值是多少？ 3）种群如何应对海洋系统中的关键环境变量：温度和盐度？ 4）是否同样受到海景影响的后生和原生地？同时解决这些问题至关重要，以真正了解基因流量，有效的人口规模和海景之间的相互作用。我们的答案有望提供对浮游生物的分散和适应的基本见解，作为浮游生物的海洋资源管理可能会导致海洋资源管理，例如有益（例如，影响食品网络碳通量）和有害的（例如有害毒性的开花）对生态系统健康的影响。这些数据还通过确定1）自适应差异在多大程度上存在或在没有高基因流动的程度上以及2）原生物学家和后代进化过程之间是否存在根本差异，这也对更广泛的问题有着重要的影响。

项目成果

A TALE OF TWO SEAS: THE ATLANTIC-MEDITERRANEAN TRANSITION IMPOSES A STRONG GENETIC BREAK IN THE PROTIST OXYRRHIS MARINA

两片海洋的故事：大西洋-地中海的转变给原生生物奥克里斯码头带来了强烈的遗传断裂

• 作者: Christopher Lowe (Author)

Who is Oxyrrhis marina? Morphological and phylogenetic studies on an unusual dinoflagellate

• DOI: 10.1093/plankt/fbq110
• 发表时间: 2011-04-01
• 期刊: JOURNAL OF PLANKTON RESEARCH
• 影响因子: 2.1
• 作者: Lowe, Chris D.;Keeling, Patrick J.;Montagnes, David J. S.
• 通讯作者: Montagnes, David J. S.

Genetic and functional diversity in the ubiquitous protist Oxyrrhis marina: a step towards quantifying adaptive variation

普遍存在的原生生物Oxyrris marina的遗传和功能多样性：迈向量化适应性变异的一步

• 作者: Christopher Lowe (Author)

Collection, isolation and culturing strategies for Oxyrrhis marina

• DOI: 10.1093/plankt/fbq161
• 发表时间: 2011-04-01
• 期刊: JOURNAL OF PLANKTON RESEARCH
• 影响因子: 2.1
• 作者: Lowe, Chris D.;Martin, Laura E.;Montagnes, David J. S.
• 通讯作者: Montagnes, David J. S.

Global phylogeny of Oxyrrhis marina

尖鞭藻的全球系统发育

• 作者: Laura Martin (Author)