High Performance Computing Cluster for Biomedical Research at VCU
High Performance Computing Cluster for Biomedical Research at VCU
批准号:
7794505
负责人:
MENG CUI
金额:
$41.69万
依托单位国家:
美国
项目类别:
财政年份:
2010
资助国家:
美国
项目状态:
已结题
起止时间:
2010-06-15 至 2013-06-14
关键词:
ArtsBioinformaticsBiomedical ResearchCollaborationsComputer SimulationComputing MethodologiesDiseaseEnvironmentGoalsHigh Performance ComputingInterdisciplinary StudyMolecular ModelsPreventionProcessResearchResearch PersonnelResourcesScientistStructureStudentsUniversitiesVirginiaX-Ray Crystallographybasecomputing resourcescostdrug discoveryhuman diseaseinterestmacromoleculemeetingsmembermodels and simulationmolecular modelingpublic health relevanceresearch studystructural biology
中文摘要
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英文摘要
DESCRIPTION (provided by applicant): The goal of this application is to enhance the computational capabilities at Virginia Commonwealth University (VCU), and benefit the researchers and students on the MCV Campus of VCU, who are interested in using advanced computational methods to investigate the relationship between structure and function of macromolecules at the atomic level. We wish to acquire a new High Performance Computing Cluster (HPCC) to meet a rapidly growing demand for tasks such as molecular modeling and simulation, computational structural biology, bioinformatics, NMR, and X-ray crystallography. By using this state-of-the-art computational facility, scientists can dramatically accelerate their research, reduce the costs for wet-lab experiments, and shorten the period of drug discovery for diseases. By developing and sharing this computational facility a team of investigators will build an environment to nurture collaborations between members and enhance an interdisciplinary research effort at VCU. This facility could also become a resource to attract new investigators to enrich biomedical research at VCU.
PUBLIC HEALTH RELEVANCE: Modern biomedical research strongly depends on high-performance computing and powerful computational resources. Advanced computational simulations will help scientists explore the relationship between structure and function of macromolecules at the atomic level, and accelerate the process of structure-based drug discovery for prevention or cure of human diseases.
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Computerized Molecular Modeling for Discovering Promising Glycosaminoglycan Oligosaccharides that Modulate Protein Function.
用于发现有前景的调节蛋白质功能的糖胺聚糖寡糖的计算机分子模型。
DOI:
10.1007/978-1-0716-1398-6_41
发表时间:
2022
期刊:
Methods in molecular biology (Clifton, N.J.)
影响因子:
--
作者:
[Sankaranarayanan,NehruViji, Desai,Umesh]
通讯作者:
Desai,Umesh
DOI:
10.1016/j.brainres.2017.03.009
发表时间:
2017-05-15
期刊:
Brain research
影响因子:
2.9
作者:
[Marmolejo-Murillo LG, Aréchiga-Figueroa IA, Cui M, Moreno-Galindo EG, Navarro-Polanco RA, Sánchez-Chapula JA, Ferrer T, Rodríguez-Menchaca AA]
通讯作者:
Rodríguez-Menchaca AA
DOI:
10.1042/bj20150059
发表时间:
2015-11-15
期刊:
The Biochemical journal
影响因子:
--
作者:
[Joseph PR, Mosier PD, Desai UR, Rajarathnam K]
通讯作者:
Rajarathnam K
Toward a robust computational screening strategy for identifying glycosaminoglycan sequences that display high specificity for target proteins.
制定稳健的计算筛选策略,用于识别对靶蛋白表现出高特异性的糖胺聚糖序列。
DOI:
10.1093/glycob/cwu077
发表时间:
2014
期刊:
Glycobiology
影响因子:
4.3
作者:
[Sankaranarayanan,NehruViji, Desai,UmeshR]
通讯作者:
Desai,UmeshR
Aqueous Molecular Dynamics for Understanding Glycosaminoglycan Recognition by Proteins.
用于理解蛋白质识别糖胺聚糖的水分子动力学。
DOI:
10.1007/978-1-0716-1398-6_5
发表时间:
2022
期刊:
Methods in molecular biology (Clifton, N.J.)
影响因子:
--
作者:
[Nagarajan,Balaji, Desai,Umesh]
通讯作者:
Desai,Umesh
共 6 条
Molecular mechanism of the bitter taste of HIV/AIDS drugs and its inhibition
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批准号:10548006
-
项目类别:
-
资助金额:$19.63万
-
财政年份:2022
-
负责人:MENG CUI
-
依托单位:
Molecular mechanism of the bitter taste of HIV/AIDS drugs and its inhibition
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批准号:10656567
-
项目类别:
-
资助金额:$23.55万
-
财政年份:2022
-
负责人:MENG CUI
-
依托单位:
Modeling Sweet Protein-Receptor Interactions
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批准号:7859444
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项目类别:
-
资助金额:$20.41万
-
财政年份:2009
-
负责人:MENG CUI
-
依托单位:
MECHANISM OF AGONISM-ANTAGONISM OF SWEET TASTE RECEPTORS
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批准号:7956118
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项目类别:
-
资助金额:$0.08万
-
财政年份:2009
-
负责人:MENG CUI
-
依托单位:
MECHANISM OF AGONISM-ANTAGONISM OF SWEET TASTE RECEPTORS
-
批准号:7723183
-
项目类别:
-
资助金额:$0.05万
-
财政年份:2008
-
负责人:MENG CUI
-
依托单位:
Modeling Sweet Protein-Receptor Interactions
-
批准号:7742608
-
项目类别:
-
资助金额:$22.2万
-
财政年份:2008
-
负责人:MENG CUI
-
依托单位:
Modeling Sweet Protein-Receptor Interactions
-
批准号:7587119
-
项目类别:
-
资助金额:$18.65万
-
财政年份:2008
-
负责人:MENG CUI
-
依托单位:
MECHANISM OF AGONISM-ANTAGONISM OF SWEET TASTE RECEPTORS
-
批准号:7601432
-
项目类别:
-
资助金额:$0.03万
-
财政年份:2007
-
负责人:MENG CUI
-
依托单位:
Mechanism of Agonism-Antagonism of Sweet Taste Receptors
-
批准号:7076888
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项目类别:
-
资助金额:$8.28万
-
财政年份:2005
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负责人:MENG CUI
-
依托单位:
Mechanism of Agonism-Antagonism of Sweet Taste Receptors
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批准号:7235263
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项目类别:
-
资助金额:$8.04万
-
财政年份:2005
-
负责人:MENG CUI
-
依托单位:
Mechanism of Agonism-Antagonism of Sweet Taste Receptors
-
批准号:6983880
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项目类别:
-
资助金额:$8.48万
-
财政年份:2005
-
负责人:MENG CUI
-
依托单位:
海外基金