Gene Discovery in Autosomal Dominant Focal Segmental Glomerulosclerosis

常染色体显性局灶节段性肾小球硬化症的基因发现

• 批准号: 8438310
• 负责人: MICHELLE P. WINN
• 金额: $ 65.95万
• 依托单位: DUKE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-09-18 至 2017-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8438310
• 关键词: Affect; Area; Bioinformatics; Biological Assay; Biology; Code; Data; Data Linkages; Data Set; Disease; End stage renal failure; Evaluation; Event; Family; Focal Segmental Glomerulosclerosis; Functional disorder; Gene Mutation; Gene Targeting; Genes; Genetic; Genetic Recombination; Genomics; Grant; Human; In Vitro; Individual; Inherited; Injury; Ion Channel; Kidney; Kidney Diseases; Lead; Molecular; Mutation; Nature; Pathogenesis; Pathology; Pattern; Prevalence; Process; Property; Proteins; RNA Splicing; Renal glomerular disease; Resources; Screening procedure; Time; Variant; WT1 gene; Work; Zebrafish; base; cohort; effective therapy; exome; gene discovery; genetic linkage analysis; genetic technology; genetic variant; genome-wide linkage; improved; in vivo; kindred; new therapeutic target; novel; novel therapeutic intervention; positional cloning; segregation; success; tool

DESCRIPTION (provided by applicant): Focal segmental glomerulosclerosis (FSGS) is a frequent cause of end-stage renal disease. The pathogenesis of FSGS has not been precisely defined and there are no consistently effective treatments. Recent studies identifying causal genes in rare, inherited FSGS, including our own study, have associated mutations in at least six genes with familial FSGS, and each discovery has clarified molecular mechanisms of glomerular injury. To build on this productive line of inquiry, we have ascertained and carefully characterized 118 families with familial FSGS. We have screened the remainder of our families for mutations in genes known to cause FSGS and identified the causal mutations in an additional 6 kindreds; the genetic basis of disease in the remaining 111 families is unknown. The objective of this proposal is to use this valuable and unique family resource to systematically identify causal genes for familial FSGS. Limitations of current conventional linkage and positional cloning approaches include their requirement for large, multiplex families. In addition, narrowing candidate areas in traditional linkage analysis can be difficult due to larg regions that lack recombination events and hence these regions have required cumbersome and lengthy screening for causative mutations. Powerful new genetic tools can facilitate this screening process and improve variant discovery in smaller families. In particular, efficient whole-exome sequencing, the targeted capture of protein-coding gene sequences, should be particularly useful in our studies since most Mendelian disorders are caused by mutations affecting exomes of the target gene. Thus, by combining genome-wide linkage analysis (GWLS) and whole-exome sequencing, we can maximize impact of our family data and accelerate identification of novel mutations in FSGS. In preliminary studies, we have used this combination to identify a novel variant in the WT1 (Wilms' Tumor-1) gene in one FSGS family, and we have evidence suggesting it is the causal mutation. This success provides proof-of-concept and provides a roadmap of how genes will be identified and evaluated in the proposed studies. Our hypothesis is that causes of inherited FSGS in our cohort of families will be sequence variants in the coding region of genes not previously associated with familial FSGS. We aim to: 1) Use GWLS and whole-exome sequencing to identify genetic variants associated with familial FSGS. 2) Characterize functional consequences of candidate causative mutations and 3) Determine the prevalence in the Duke FSGS dataset of these new causative mutations identified in Aim 2. Any genes found to have causative mutations will be sequenced in the remaining families and take full advantage of our family resource. By combining genome-wide linkage analysis (GWLS), whole-exome sequencing, and characterization of variants' functional consequences, we will significantly improve understanding of normal glomerular biology and of the pathogenesis of FSGS and related glomerular diseases. Moreover, our discoveries are likely to reveal new opportunities to improve therapy for a disease that currently has few effective treatments. PUBLIC HEALTH RELEVANCE: This grant analyzes 20 families with autosomal dominant, hereditary focal segmental glomerulosclerosis (FSGS). The linkage analysis will be performed and the human exome will be sequenced in each of these families to help understand the genetic basis for their kidney disease, better understand the underlying pathogenesis and to hopefully find better treatment options for those with FSGS.

描述（由申请人提供）：局灶节段性肾小球硬化（FSGS）是终末期肾病的常见原因。FSGS的发病机制尚未确切定义，也没有一致有效的治疗方法。最近的研究确定了罕见的遗传性FSGS的致病基因，包括我们自己的研究，至少有六个基因的突变与家族性FSGS相关，每一个发现都阐明了肾小球损伤的分子机制。为了建立在这条富有成效的调查路线上，我们已经确定并仔细描述了118个家族性FSGS家庭。我们已经筛选了我们的家族中已知引起FSGS的基因突变，并确定了另外6个家族中的致病突变;其余111个家族中疾病的遗传基础尚不清楚。本建议的目的是利用这一宝贵的和独特的家庭资源，系统地确定致病基因的家族性FSGS。目前传统的连锁和定位克隆方法的局限性包括它们需要大的、多重的家族。此外，在传统连锁分析中缩小候选区域可能是困难的，这是由于缺乏重组事件的大区域，因此这些区域需要繁琐且漫长的致病突变筛选。强大的新遗传工具可以促进这一筛选过程，并改善较小家庭的变异发现。特别是，高效的全外显子组测序，蛋白质编码基因序列的靶向捕获，应该在我们的研究中特别有用，因为大多数孟德尔疾病是由影响靶基因外显子组的突变引起的。因此，通过将全基因组连锁分析（GWLS）和全外显子组测序相结合，我们可以最大限度地发挥家族数据的影响，并加速FSGS中新突变的鉴定。在初步研究中，我们已经使用这种组合来鉴定一个FSGS家族中WT1（Wilms 'Tumor-1）基因的新变体，并且我们有证据表明它是因果突变。这一成功提供了概念验证，并为在拟议的研究中如何识别和评估基因提供了路线图。我们的假设是，在我们的家族队列中，遗传性FSGS的原因是先前与家族性FSGS无关的基因编码区的序列变异。我们的目标是：1）使用GWLS和全外显子组测序来鉴定与家族性FSGS相关的遗传变异。2)表征候选致病突变的功能后果，以及3）确定目标2中鉴定的这些新致病突变在杜克FSGS数据集中的患病率。任何发现有致病突变的基因都将在剩下的家族中进行测序，并充分利用我们的家族资源。通过结合全基因组连锁分析（GWLS），全外显子组测序和变体功能后果的表征，我们将显着提高正常肾小球生物学和FSGS和相关肾小球疾病的发病机制的理解。此外，我们的发现可能会揭示新的机会，以改善目前几乎没有有效治疗方法的疾病的治疗。 公共卫生相关性：该资助分析了20个患有常染色体显性遗传性局灶性节段性肾小球硬化症（FSGS）的家庭。将进行连锁分析，并对每个家族的人类外显子组进行测序，以帮助了解其肾脏疾病的遗传基础，更好地了解潜在的发病机制，并希望为FSGS患者找到更好的治疗方案。