Systems Biology Analyses for Hemodynamic Regulation of Vascular Homeostasis

血管稳态血流动力学调节的系统生物学分析

• 批准号: 8332732
• 负责人: SHU CHIEN
• 金额: $ 109.07万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN DIEGO
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-08-24 至 2017-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8332732
• 关键词: Animals; Anti-Inflammatory Agents; Anti-inflammatory; Apolipoprotein E; Apoptosis; Area; Arterial Fatty Streak; Atherosclerosis; Bioinformatics; Biological Assay; Blood Vessels; Cardiovascular Diseases; Cardiovascular system; Cell physiology; Cells; Chromosome Mapping; Cues; Data; Disease; Endothelial Cells; Event; Figs - dietary; Gene Expression; Gene Expression Regulation; Genes; Health; Homeostasis; In Vitro; Inflammation; Inflammatory; Knock-out; Knowledge; Lead; Leukocytes; Maintenance; Maps; Measurement; Mechanics; Messenger RNA; Modeling; Molecular; Molecular Profiling; Mus; Nature; Output; Oxidation-Reduction; Pathway interactions; Pattern; Phenotype; Physiological; Play; Prevention; Procedures; Process; Proteins; Proteomics; Regulation; Resistance; Resolution; Role; Signal Pathway; Signal Transduction; Signaling Molecule; Signaling Pathway Gene; Simulate; Small Interfering RNA; Staging; Stress; System; Systems Biology; Thoracic aorta; Time; Tissues; Transcriptional Regulation; Translational Regulation; Trees; Vascular Diseases; Vascular Endothelial Cell; Wound Healing; aortic arch; base; disorder prevention; hemodynamics; in vivo; inhibitor/antagonist; insight; loss of function; monocyte; network models; novel; oxidation; protective effect; reconstruction; research study; response; shear stress

DESCRIPTION (provided by applicant): The focal nature of the atherosclerotic lesions indicates that hemodynamic forces are critical for the regulation of vascular homeostasis in health and disease. Responses of vascular endothelial cells (ECs) to hemodynamic forces play significant roles in such regulations. In vivo studies implicate that the ECs in branch points express pro-atherogenic phenotypes. In contrast, ECs in the straight parts of the arterial tree are exposed to high shear flow with a large net forward direction, and these regions are generally spared from atherosclerosis. The in vitro studies by others and us suggest that steady and pulsatile shear stresses (PS) with a net forward direction, which simulates the flow condition at the straight part of the arterial tree, induce genes involved in anti-proliferation, anti-oxidation anti-inflammation, and maintenance of vascular tone, with athero-protective effects such as reduction of cell turnover, prevention of white cell recruitment, promotion of wound healing, and adaptive remodeling. In contrast, oscillatory shear stress (OS) without a significant forward direction is atherogenic by activating pro-proliferative, pro-oxidative, and pro-inflammatory genes. We hypothesize that, while PS and OS may activate similar signaling events at the initial stage, the results will diverge with time. Time-dependent mapping of the signal networks will lead to temporal resolution of the gene expression profiles, hence the differential functional consequences of PS vs. OS. In this proposed project, we will examine the signaling, transcriptional regulations, and functional phenotypes of ECs under PS and OS over time. Mapping the differential pathways under these flow conditions requires the use of systems biology approaches that provides a comprehensive mechanistic and network perspective on the diferential responses to stresses. In order to systematically map the flow-regulation of EC functions, we propose the following specific aims: (1) To establish the temporal map of EC signaling events under PS vs, OS. (2) To investigate the transcriptional regulations of EC gene expression under PS vs, OS. (3) To examine the temporal resolution of phenotypic responses of ECs under PS vs, OS. (4) To integrate molecular events and EC functions by reconstruction of signaling models. (5) To validate the defined EC signaling events and gene expressions in mouse arterial tree. Under these Specific Aims, we will conduct experiments systematically to obtain the data necessary for the systems biology analyses to construct the molecular and pathway models for the physiological and pathological regulations of EC molecular events and functional consequences. This integrative and collaborative systems biology approach will generate new insights into the intricate process of mechanotransduction by which different flow patterns modulate homeostasis in the arterial wall. These findings will greatly enhance our understanding of the molecular and mechanical bases of atherosclerosis, a major pathophysiological event in cardiovascular diseases. PUBLIC HEALTH RELEVANCE: We propose to use the systems biology approach combining the experimental procedures and bioinformatics analyses to understand the hemodynamic regulation of vascular functions. The resultant mechanistic and pathway models will provide critical information on the mechanisms of atherosclerosis, a major vascular disease impairing cardiovascular health. The study will also provide novel knowledge for disease prevention, treatments, and management.

描述（由申请方提供）：动脉粥样硬化病变的局灶性性质表明，血液动力学对于健康和疾病中血管稳态的调节至关重要。血管内皮细胞（EC）对血流动力学的反应在这种调节中起着重要作用。体内研究表明，分支点的EC表达促动脉粥样硬化表型。相比之下，动脉树的直线部分中的EC是 暴露于具有大净向前方向的高剪切流，并且这些区域通常免于动脉粥样硬化。其他人和我们的体外研究表明，具有净前向方向的稳定和脉动剪切应力（PS），其模拟动脉树直部的流动条件，诱导涉及抗增殖、抗氧化、抗炎和维持血管张力的基因，具有动脉粥样硬化保护作用，如减少细胞更新、防止白色细胞募集、促进伤口愈合，和适应性重塑相比之下，没有显著正向的振荡剪切应力（OS）通过激活促增殖、促氧化和促炎基因而致动脉粥样硬化。我们假设，虽然PS和OS可能在初始阶段激活类似的信号事件，但结果将随时间而不同。时间依赖性映射的信号网络将导致时间分辨率的基因表达谱，因此PS与OS的差异功能的后果。在这个拟议的项目中，我们将研究的信号，转录调控，和功能表型的EC PS和OS下随着时间的推移。绘制这些流动条件下的差分途径需要使用系统生物学方法，提供了一个全面的机制和网络的角度对应力的差异反应。为了系统地绘制EC功能的流量调节图，我们提出了以下具体目标：（1）建立PS vs，OS下EC信号事件的时间图谱。（2）研究PS vs，OS下EC基因表达的转录调控。（3）研究PS vs，OS下EC表型反应的时间分辨率。（4）通过信号转导模型的重建，整合分子事件和EC功能。(5)验证小鼠动脉树EC信号转导事件和基因表达。在这些特定目标下，我们将系统地进行实验，以获得系统生物学分析所需的数据，以构建EC分子事件和功能后果的生理和病理调节的分子和途径模型。这种整合和协作的系统生物学方法将产生新的见解复杂的过程中mechanotransduction不同的流量模式调节动脉壁的稳态。这些发现将大大提高我们对动脉粥样硬化的分子和力学基础的理解，动脉粥样硬化是心血管疾病的主要病理生理事件。 公共卫生相关性：我们建议使用系统生物学方法结合实验程序和生物信息学分析来了解血管功能的血流动力学调节。由此产生的机制和途径模型将提供关键信息动脉粥样硬化的机制，损害心血管健康的主要血管疾病。该研究还将为疾病预防，治疗和管理提供新的知识。