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Transcriptome profiling of sour taste cells

酸味细胞的转录组分析

基本信息

批准号：
8401053
负责人：
EMILY R. LIMAN
金额：
$ 24.6万
依托单位：
UNIVERSITY OF SOUTHERN CALIFORNIA
依托单位国家：
美国
项目类别：
财政年份：
2012
资助国家：
美国
起止时间：
2012-07-01 至 2014-06-30
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8401053
关键词：
Acids Action Potentials Apical Biological Assay Candidate Disease Gene Cell membrane Cells Complementary DNA Data Detection Feeding behaviors Food Gene Expression Profile Generations Genes Genetic Transcription Goals Health Human In Situ Hybridization Integral Membrane Protein Ion Channel Ions Label Length Libraries Measures Mediating Membrane Messenger RNA Modeling Molecular Molecular Profiling Monitor Mouse Protein Mus Nutritional Organism Pathway interactions Personal Satisfaction Proteins Protons RNA Receptor Signaling Safety Sensory Signal Transduction Signaling Molecule Specificity Stimulus Structure of thyroid parafollicular cell System Taste Perception Testing Tissues Transcript Transgenic Mice Work base cDNA Library cell type interest next generation novel patch clamp promoter protein expression receptor research study response sensor sweet taste perception

项目摘要

DESCRIPTION (provided by applicant): Most vertebrate species are responsive to five basic tastes: sweet, bitter, umami, sour and salty, each of which provides unique information on the nutritional content and safety of ingested food. Each of the five taste qualities is detected by a distinct subset of taste cells, which express distinct receptors and signaling molecules. While great progress has been made in understanding the molecules and pathways that mediate bitter, sweet, umami and salty tastes, relatively little is known about sour taste. The cells that detect sour taste have been shown to be defined by expression of the TRP ion channel PKD2L1, but the Pkd2l1 gene itself is dispensable for sour taste and the ionic mechanisms that underlie sensory responses to sour remain poorly understood. In recent work, using a mouse in which yellow fluorescent protein (YFP) was driven by the promoter of Pkd2l1, we showed that sour taste cells express a novel proton conductance which contributes to the response to acids. The specific goal of the current proposal is to identify the gene that encodes this proton conductance. To do this, we propose two specific aims. In aim 1, we will use deep sequencing to perform transcription profiling of YFP-tagged sour cells and we will identify transcripts that ae enriched in Pkd2l1 cells and are likely to encode novel transmembrane proteins. Under Aim 2, we will express the top candidates in a heterologous cell type and determine with patch clamp recording whether they generate a proton channel. The identification of this proton channel will represent an important step in understanding the taste system, and may help define a new class of ion channels. Taste is an essential way in which humans and other organisms regulate their ingestive behavior and the identification of key molecular components of taste signaling can therefore have a direct impact on human health and well-being. PUBLIC HEALTH RELEVANCE: The proposed experiments use next generation sequencing of mRNA transcripts from genetically labeled taste cells to identify a novel ion channel that mediates sour taste transduction. Taste is an essential way in which humans and other organisms regulate their ingestive behavior and the identification of key molecular components of taste signaling can therefore have a direct impact on human health and well-being.

描述（由申请人提供）：大多数脊椎动物物种对五种基本味道有反应：甜、苦、鲜、酸和咸，每种味道都提供了关于摄入食物的营养成分和安全性的独特信息。五种味觉品质中的每一种都是由不同的味觉细胞亚群检测到的，这些味觉细胞表达不同的受体和信号分子。虽然在理解介导苦味、甜味、鲜味和咸味的分子和途径方面取得了很大进展，但对酸味的了解相对较少。检测酸味的细胞已被证明是由TRP离子通道PKD2L1的表达所定义的，但Pkd2L1基因本身对酸味是不敏感的，并且对酸的感觉反应的离子机制仍然知之甚少。在最近的工作中，使用黄色荧光蛋白（YFP）由Pkd2l1的启动子驱动的小鼠，我们表明酸味细胞表达一种新的质子电导，有助于对酸的反应。目前建议的具体目标是确定编码这种质子传导的基因。为此，我们提出两个具体目标。在目标1中，我们将使用深度测序来进行YFP标记的酸性细胞的转录谱分析，并且我们将鉴定在Pkd2l1细胞中富集并且可能编码新的跨膜蛋白的转录物。在目标2下，我们将在异源细胞类型中表达最佳候选物，并用膜片钳记录确定它们是否产生质子通道。这种质子通道的鉴定将代表理解味觉系统的重要一步，并可能有助于定义一类新的离子通道。味觉是人类和其他生物调节其摄取行为的重要方式，因此识别味觉信号的关键分子组分可以对人类健康和福祉产生直接影响。公共卫生关系：所提出的实验使用来自遗传标记的味觉细胞的mRNA转录物的下一代测序来鉴定介导酸味转导的新型离子通道。味觉是人类和其他生物调节其摄取行为的重要方式，因此识别味觉信号的关键分子组分可以对人类健康和福祉产生直接影响。