Desorption Electrospray Ionization Mass Spectrometry Imaging in Clinical Diagnost
Desorption Electrospray Ionization Mass Spectrometry Imaging in Clinical Diagnost
批准号:
8728229
负责人:
Robert Graham Cooks
金额:
$17.46万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2013
资助国家:
美国
项目状态:
已结题
起止时间:
2013-09-01 至 2016-08-31
关键词:
ArchivesAttentionBioinformaticsBladderCancerousChemicalsClassificationClassification SchemeClinicClinicalCollaborationsComplementDataDatabasesDevelopmentDiagnosisDiagnosticDiscriminant AnalysisDiscriminationDiseaseElectrospray IonizationEnvironmentEvaluationFutureHematoxylin and Eosin Staining MethodHistocompatibility TestingHistocytochemistryHistologicHistologyHistopathologyHumanImageImaging technologyIndianaIonsKidneyLaboratoriesLearningLeast-Squares AnalysisLipidsMalignant NeoplasmsMalignant neoplasm of testisMalignant neoplasm of urinary bladderMass Spectrum AnalysisMedicalMethodologyMethodsMolecularMolecular DiagnosisMolecular ProfilingMorphologyOperating RoomsOperative Surgical ProceduresOpticsOrganPathologistPathologyPatternPerformancePositioning AttributePreparationProceduresRenal carcinomaResectedResolutionSamplingSeriesSoftware ToolsSolventsSourceSpecialistSpectrometry, Mass, Electrospray IonizationStagingStaining methodStainsStatistical MethodsSurfaceSurgeonSystemTechnologyTestingTimeTissue SampleTissuesTrainingTranslationsUniversitiesValidationWorkbasecancer diagnosiscohortimaging modalityimprovedindexinginstrumentinstrumentationionization techniquelight microscopymass spectrometermedical schoolsminiaturizemolecular imagingneoplasticoptical imagingpublic health relevanceremediationresearch studytooltumor
中文摘要
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英文摘要
DESCRIPTION (provided by applicant): A method of tissue diagnosis based on mass spectrometry (MS) will be evaluated to distinguish the presence, type and grade of kidney, bladder and testicular cancers. The solvent-based method of desorption electrospray ionization (DESI) MS will be used to examine tissue directly and the resulting distribution of lipid-derived ions will be used to characterize the disease state of the tissue. This will be facilitated by building a data base of representative patterns of lipid ion intensities associated with tissue of different disease states and grades. Independent tissue characterization will be made by the standard methods of histopathology. Multivariate statistical tools will be used to evaluate the DESI-MS imaging data and software tools will be developed to correlate DESI molecular images with H&E stained optical images. (This aspect of the work will be led by Prof. Olga Vitek, a statistician and specialist in bioinformatics.) Special attention will be given to DESI solvents tht are morphologically non-destructive, so allowing DESI imaging to be inserted at any point in the surgical work-flow. The hypothesis underlying this effort is that the molecular information provided on lipid distributions in tissue is diagnostic of malignancy and complements the evaluation of tumor margins using histopathology. To test the capabilities of DESI-MS as a diagnostic tool for surgical applications, we will locate a DESI- equipped mass spectrometer in an Indiana University School of Medicine pathology laboratory. There, tests of the DESI method will be made in collaboration with a pathologist (Dr. Liang Cheng) using samples provided by a surgeon (Dr. Timothy Masterson). The experiments will occur in three stages: a) Off-line analysis of excised tissue without interfering with standard procedures used in surgical intervention. Tissue will be sprayed with a solvent and the mass spectra will be evaluated to reach a diagnosis (cancer, and its grade; or normal). These results will be compared with diagnoses obtained by standard histopathology. b) On-line tissue section imaging in parallel with standard pathology examination will be used to validate the capability of DESI-MS to yield pathological information on the time-scale of the surgery. These experiments will be used to validate/invalidate DESI-MS imaging as the primary step in clinical tissue- analysis workflow for tumor margin assessment. c) Rapid on-line DESI analysis of excised tissue during surgery will be used to check that the surface of resected tissue is clean of tumor margins. By using an indexing system the position of any incompletely removed cancerous tissue will be localized on a time scale suitable for surgical remediation. In preparation for future developments in which MS is utilized in the surgical suite, the performance of a small mass spectrometer will be improved to allow lipid analysis to mass 1000 Da at unit resolution.
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DOI:
10.1039/c7an01334e
发表时间:
2017-10-23
期刊:
The Analyst
影响因子:
--
作者:
[Pirro V, Llor RS, Jarmusch AK, Alfaro CM, Cohen-Gadol AA, Hattab EM, Cooks RG]
通讯作者:
Cooks RG
Effect of lipid extraction and room temperature transportation of bovine oocytes determined by MRM profiling.
通过 MRM 分析确定牛卵母细胞脂质提取和室温运输的效果。
DOI:
10.21203/rs.3.rs-3788683/v1
发表时间:
2023
期刊:
Research square
影响因子:
--
作者:
[deLima,CamilaBruna, Milazzotto,MarcellaPecora, Vireque,AlessandraAparecida, Joaquim,DanielCarlino, Sobreira,TiagoJosePaschoal, Ferreira,ChristinaRamires]
通讯作者:
Ferreira,ChristinaRamires
DOI:
10.1016/j.aca.2014.08.001
发表时间:
2014-10-27
期刊:
Analytica chimica acta
影响因子:
6.2
作者:
[Pirro V, Oliveri P, Ferreira CR, González-Serrano AF, Machaty Z, Cooks RG]
通讯作者:
Cooks RG
DOI:
10.1371/journal.pone.0163180
发表时间:
2016
期刊:
PloS one
影响因子:
3.7
作者:
[Jarmusch AK, Alfaro CM, Pirro V, Hattab EM, Cohen-Gadol AA, Cooks RG]
通讯作者:
Cooks RG
DOI:
10.1093/jalm/jfaa233
发表时间:
2021-07-07
期刊:
The journal of applied laboratory medicine
影响因子:
--
作者:
[Brown HM, Alfaro CM, Pirro V, Dey M, Hattab EM, Cohen-Gadol AA, Cooks RG]
通讯作者:
Cooks RG
共 6 条
High throughput infrastructure for reaction screening and bioassays
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批准号:10447513
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项目类别:
-
资助金额:$89.83万
-
财政年份:2022
-
负责人:Robert Graham Cooks
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依托单位:
High throughput infrastructure for reaction screening and bioassays
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批准号:10630956
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项目类别:
-
资助金额:$94.04万
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财政年份:2022
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负责人:Robert Graham Cooks
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依托单位:
Desorption Electrospray Ionization Mass Spectrometry Imaging in Clinical Diagnost
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批准号:8583838
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项目类别:
-
资助金额:$21.38万
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财政年份:2013
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负责人:Robert Graham Cooks
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依托单位:
Tissue Imaging Using Desorption Electrospray Ionization Mass Spectrometry
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批准号:7781380
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项目类别:
-
资助金额:$17.71万
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财政年份:2009
-
负责人:Robert Graham Cooks
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依托单位:
Tissue Imaging Using Desorption Electrospray Ionization Mass Spectrometry
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批准号:7641837
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项目类别:
-
资助金额:$20.7万
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财政年份:2009
-
负责人:Robert Graham Cooks
-
依托单位:
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批准号:--
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资助金额:30万元
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批准年份:2022
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负责人:郑巧
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依托单位:
Ultrasomics-Attention孪生网络早期精准评估肝内胆管癌免疫治疗的研究
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批准号:--
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项目类别:面上项目
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资助金额:52万元
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批准年份:2022
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负责人:陈立达
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依托单位: