Structural basis for RPA and DNA primase functions

RPA 和 DNA 引物酶功能的结构基础

• 批准号: 8598090
• 负责人: WALTER J. CHAZIN
• 金额: $ 33.62万
• 依托单位: VANDERBILT UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-02-01 至 2015-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8598090
• 关键词: Address; Affinity; Amino Acid Sequence; Architecture; Bacteria; Binding; Biochemical; Biological Assay; Biological Models; Cells; Collaborations; Complex; Computer Simulation; Crystallography; DNA; DNA Binding; DNA Primase; DNA biosynthesis; DNA-Directed DNA Polymerase; Defect; Dependence; Disease; Enzymes; Fluorescence Polarization; Foundations; Genome; Genomic Instability; Goals; Hand; Human; Hybrids; Knowledge; Lead; Length; Link; Maintenance; Malignant Neoplasms; Maps; Modeling; Molecular; Mutation; NMR Spectroscopy; Neutrons; Nucleotides; Pathway interactions; Peptide Sequence Determination; Polymerase; Primer Extension; Process; Proteins; RNA; RNA chemical synthesis; RNA primers; Replication Initiation; Replication Origin; Research; Roentgen Rays; Role; SS DNA BP; Simian virus 40; Single-Stranded DNA; Site; Structure; System; Work; base; design; helicase; insight; mutant; programs; protein complex; protein structure; replication factor A

DESCRIPTION (provided by applicant): Replication of DNA is a complex multi-step process essential to cell propagation and survival, which proceeds via the action of multi-protein machines. Understanding the machinery at the replication fork has high impact because it is the most critical site for propagation and maintenance of the genome. While considerable progress has been made in elucidating the mechanisms of DNA replication from studies of bacteria and archae, information on replication in humans is lacking because the protein sequences and structures are not conserved. The long-term goal of our research is to understand the action of the DNA replication machinery in humans. Our research currently focuses on understanding the initiation of the step known as DNA priming. We have shown active loading of human replication protein A (RPA) onto single-stranded DNA (ssDNA) created by the SV40 helicase at the origin of replication and involvement of RPA in the transition to DNA priming. After the DNA is unwound, an initial primer is synthesized on the ssDNA template by primase. The studies proposed here are designed to generate insight into how RPA and primase function together to initiate synthesis of the primer strand. Aim 1 investigates the structure of RPA in different DNA-bound states using a combination of small angle X-ray and neutron scattering (SAXS, SANS) and NMR spectroscopy. Aim 2 addresses the role of interactions with RPA in promoting the loading of primase on the template using a combination of biochemical mapping and structural analyses by NMR, modeling, SAXS and SANS. Once primase is loaded on the DNA template, it synthesizes a ~10 nucleotide primer and then transfers the primed template to DNA polymerase a for primer extension. The means by which primase recognizes the template and counts the length of the primer remains a complete mystery. Aim 3 proposes to elucidate the structural basis for these processes by determining x-ray crystal structures of primase in different DNA bound states. Together, these results will inform the structural basis for the hand-off of ssDNA from RPA to DNA primase and counting of the RNA primer, which are critical steps in the replication of DNA.

描述（由申请人提供）：DNA的复制是一个复杂的多步骤过程，对细胞的繁殖和生存至关重要，它通过多蛋白质机器的作用进行。了解复制叉的机制具有很高的影响，因为它是基因组繁殖和维持的最关键的位点。虽然从细菌和古细菌的研究中，在阐明DNA复制机制方面取得了相当大的进展，但由于蛋白质序列和结构并不保守，因此缺乏关于人类DNA复制的信息。我们研究的长期目标是了解人类DNA复制机制的作用。我们的研究目前集中在理解被称为DNA启动的步骤的启动。我们已经证明了人类复制蛋白A （RPA）在复制起始处由SV40解旋酶产生的单链DNA （ssDNA）上的主动装载，以及RPA参与了向DNA引物的过渡。DNA解绕后，引物酶在ssDNA模板上合成初始引物。这里提出的研究旨在深入了解RPA和引物酶如何共同启动引物链的合成。目的1利用小角x射线和中子散射（SAXS， SANS）和核磁共振波谱相结合的方法研究不同dna结合状态下RPA的结构。目的2利用生化制图和核磁共振、建模、SAXS和SANS的结构分析相结合，解决了与RPA相互作用在促进模板上引物酶装载中的作用。一旦引物酶被装载到DNA模板上，它就会合成一个约10个核苷酸的引物，然后将引物模板转移到DNA聚合酶a上进行引物延伸。引物酶识别模板和计算引物长度的方法仍然是一个完全的谜。目的3提出通过测定引物酶在不同DNA结合状态下的x射线晶体结构来阐明这些过程的结构基础。总之，这些结果将为ssDNA从RPA转移到DNA引物酶和RNA引物计数的结构基础提供信息，这是DNA复制的关键步骤。